Article
Chemistry, Multidisciplinary
Hendrik Hessefort, Angelina Gross, Simone Seeleithner, Markus Hessefort, Tanja Kirsch, Lukas Perkams, Klaus Ole Bundgaard, Karen Gottwald, David Rau, Christopher Guenther Franz Graf, Elisabeth Rozanski, Sascha Weidler, Carlo Unverzagt
Summary: The in-vivo activity of EPO is carbohydrate-dependent, with the number of sialic acid residues regulating its circulatory half-life. A chemoenzymatic approach was developed for obtaining glycoforms of EPO with and without sialic acids. Synthetic EPOs showed biological recognition by forming 1:1 complexes with recombinant EPO receptor.
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION
(2021)
Article
Chemistry, Multidisciplinary
Lukas Kerul, Maximilian Schrems, Alanca Schmid, Rajeshwari Meli, Christian F. W. Becker, Claudia Bello
Summary: This study describes the establishment of a semi-synthesis strategy for the preparation of modified variants of G-CSF, addressing the issues of low solubility and aggregation. The successful preparation of G-CSF variants with biological activity in cell proliferation assays was achieved.
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION
(2022)
Article
Chemistry, Multidisciplinary
Andreas Reif, Kevin Lam, Sascha Weidler, Marie Lott, Irene Boos, Juliane Lokau, Christian Bretscher, Manuel Moennich, Lukas Perkams, Marina Schmaelzlein, Christopher Graf, Jan-Patrick Fischer, Carolin Lechner, Kerstin Hallstein, Stefan Becker, Michael Weyand, Clemens Steegborn, Gerhard Schultheiss, Stefan Rose-John, Christoph Garbers, Carlo Unverzagt
Summary: A library of glycoforms of human interleukin 6 (IL-6) was generated using semisynthesis, and their in vivo plasma clearance rates in rats were evaluated. The results showed that IL-6 glycoforms with different structures exhibited varying clearance rates in the body, with 2,6-sialylated glycoforms of IL-6 being cleared faster in most cases.
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION
(2021)
Article
Chemistry, Multidisciplinary
Jie Zhao, Jiazhi Liu, Xinnan Liu, Qi Cao, Hongbo Zhao, Lizhen Liu, Farong Ye, Can Wang, Hong Shao, Dongxiang Xue, Houchao Tao, Bin Li, Biao Yu, Ping Wang
Summary: This article reports a highly efficient method for preparing homogeneous glycosylated IL-2 and reveals that the activity of IL-2 in activating T cell subsets is dependent on glycans, highlighting the possibility of improving current clinical medicine.
CHINESE JOURNAL OF CHEMISTRY
(2022)
Article
Chemistry, Multidisciplinary
Abhisek Kar, Mrinmoy Jana, Vishal Malik, Arighna Sarkar, Kalyaneswar Mandal
Summary: This study successfully synthesized the receptor binding domain (RBD) of the SARS-CoV-2 spike protein and discussed the challenges and strategies in the chemical synthesis process. The chemically synthesized RBD efficiently bound to the known mini-protein binder LCB1, providing valuable insights into the biology of SARS-CoV-2 spike RBD.
CHEMISTRY-A EUROPEAN JOURNAL
(2023)
Article
Chemistry, Multidisciplinary
Thorben Maass, George Ssebyatika, Marlene Brueckner, Lea Breckwoldt, Thomas Krey, Alvaro Mallagaray, Thomas Peters, Martin Frank, Robert Creutznacher
Summary: This study used NMR experiments to investigate the binding of selected glycans and glycomimetics to the SARS CoV-2 spike glycoprotein and its receptor binding domain. The results revealed strong binding between sialoglycans and the Wuhan strain S-protein, weak binding between sialoglycans and the Omicron/BA.1 S-protein, and no binding between sialoglycans and the Delta 143-145 deletion mutant of the Wuhan S-protein. Additionally, the glycomimetics Oseltamivir and Zanamivir exhibited weak binding to the S-protein of both virus strains.
CHEMISTRY-A EUROPEAN JOURNAL
(2022)
Article
Microbiology
Yaqing Liu, Hiroshi Katoh, Tsuyoshi Sekizuka, Chaewon Bae, Aika Wakata, Fumihiro Kato, Masafumi Sakata, Toshiyuki Yamaji, Zhiyu Wang, Makoto Takeda
Summary: This study identified 638 host proteins closely associated with MuV glycoproteins, and revealed comprehensive protein-protein interaction networks among these host proteins. It was found that a SNARE subfamily protein, USE1, specifically bound to MuV F protein and played an important role in MuV propagation.
Article
Pharmacology & Pharmacy
Smarajit Maiti, Amrita Banerjee, Mehak Kanwar
Summary: Nigellidine binds strongly to various angiotensin-binding proteins and the spike glycoprotein of COVID-19, potentially providing therapeutic benefits in COVID-19 patients by mitigating vascular disturbances caused by angiotensin dysregulations.
VASCULAR PHARMACOLOGY
(2021)
Article
Multidisciplinary Sciences
Alicia M. Matthews, Thomas Biel, Uriel Ortega-Rodriguez, Vincent Falkowski, Xin Bush, Talia Faison, Hang Xie, Cyrus Agarabi, V. Ashutosh Rao, Tongzhong Ju
Summary: This study established CHO cell lines that express ACE2-Fc proteins and partially characterized their physicochemical properties and spike protein binding. The results show that the fusion proteins are heavily N-glycosylated, sensitive to thermal stress, and bind to different spike protein variants with varying affinity. This research provides a proof-of-concept production strategy for ACE2-Fc fusion glycoproteins that could be used in the development of alternative countermeasures against emerging SARS-CoV-2 variants.
Article
Biochemistry & Molecular Biology
Annalisa D'Arco, Marta Di Fabrizio, Tiziana Mancini, Rosanna Mosetti, Salvatore Macis, Giovanna Tranfo, Giancarlo Della Ventura, Augusto Marcelli, Massimo Petrarca, Stefano Lupi
Summary: In this study, the conformation of the S1 subunits of MERS-CoV, SARS-CoV, and SARS-CoV-2 were investigated by measuring their Amide I infrared absorption bands. The results showed significant differences in the S1 secondary structure of SARS-CoV-2 compared to MERS-CoV and SARS-CoV, including a significant presence of extended beta-sheets. Additionally, the SARS-CoV-2 S1 conformation exhibited significant changes in mild acidic and alkaline pH conditions compared to serological pH. These findings suggest the potential of infrared spectroscopy in studying the secondary structure adaptation of SARS-CoV-2 S1 in different environments.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
(2023)
Article
Chemistry, Medicinal
Zeshi Li, Lin Liu, Luca Unione, Yifei Lang, Raoul J. de Groot, Geert-Jan Boons
Summary: A panel of O-acetylated N-glycolylneuraminic acid oligosaccharides has been prepared by regioselective de-O-acetylation and acetyl ester migration. The binding patterns of viral envelope glycoproteins differ between N-glycolyated sialosides and N-acetylated counterparts, suggesting coronaviruses have adjusted their receptor specificities to adapt to the sialoglycome of their host species.
ACS INFECTIOUS DISEASES
(2022)
Article
Biochemistry & Molecular Biology
S. Tsygankova, G. Pazynina, A. S. Paramonov, A. O. Chizhov, N. Bovin
Summary: The disaccharide Xyl beta 1-2Man beta has been synthesized with a spacer-arm for the first time. This structural fragment is commonly found in plant cell glycoprotein N-chains but is not present in mammals. It is believed that plants have proteins that can specifically recognize the Xyl beta 1-2Man beta motif, making molecular probes based on this disaccharide important for the search, isolation, and cellular localization of Xyl beta 1-2Man beta-recognizing lectins and enzymes.
RUSSIAN JOURNAL OF BIOORGANIC CHEMISTRY
(2022)
Article
Multidisciplinary Sciences
Kizzmekia S. Corbett, Matthew Gagne, Danielle A. Wagner, Sarah O' Connell, Sandeep R. Narpala, Dillon R. Flebbe, Shayne F. Andrew, Rachel L. Davis, Barbara Flynn, Timothy S. Johnston, Christopher D. Stringham, Lilin Lai, Daniel Valentin, Alex Van Ry, Zackery Flinchbaugh, Anne P. Werner, Juan Moliva, Manjari Sriparna, Sijy O'Dell, Stephen D. Schmidt, Courtney Tucker, Angela Choi, Matthew Koch, Kevin W. Bock, Mahnaz Minai, Bianca M. Nagata, Gabriela S. Alvarado, Amy R. Henry, Farida Laboune, Chaim A. Schramm, Yi Zhang, Eun Sung Yang, Lingshu Wang, Misook Choe, Seyhan Boyoglu-Barnum, Shi Wei, Evan Lamb, Saule T. Nurmukhambetova, Samantha J. Provost, Mitzi M. Donaldson, Josue Marquez, John-Paul M. Todd, Anthony Cook, Alan Dodson, Andrew Pekosz, Eli Boritz, Aurelie Ploquin, Nicole Doria-Rose, Laurent Pessaint, Hanne Andersen, Kathryn E. Foulds, John Misasi, Kai Wu, Andrea Carfi, Martha C. Nason, John Mascola, Ian N. Moore, Darin K. Edwards, Mark G. Lewis, Mehul S. Suthar, Mario Roederer, Adrian McDermott, Daniel C. Douek, Nancy J. Sullivan, Barney S. Graham, Robert A. Seder
Summary: The study found that neutralizing antibody responses against several variants of concern gradually declined after vaccination with the mRNA-1273 vaccine for the SARS-CoV-2 virus. However, boosting nonhuman primates with either homologous or heterologous mRNA-1273 vaccines after 6 months resulted in increased neutralizing antibody responses across all variants of concern, which lasted for at least 8 weeks after the boost. After being challenged with the SARS-CoV-2 Beta variant 9 weeks post-boost, viral replication was low to undetectable in bronchoalveolar lavage and significantly reduced in nasal swabs in all boosted animals, indicating the potential necessity for booster vaccinations to maintain immunity and protection.
Article
Virology
Alexandra Tauzin, Guillaume Beaudoin-Bussieres, Mehdi Benlarbi, Manon Nayrac, Yuxia Bo, Gabrielle Gendron-Lepage, Halima Medjahed, Josee Perreault, Laurie Gokool, Pascale Arlotto, Chantal Morrisseau, Cecile Tremblay, Daniel E. Kaufmann, Valerie Martel-Laferriere, Ines Levade, Marceline Cote, Renee Bazin, Andres Finzi
Summary: While a significant portion of the global population has been vaccinated against SARS-CoV-2, new variants continue to emerge. This study finds that even after receiving a fifth dose of the mRNA bivalent vaccine, most vaccinated individuals have weak neutralizing antibodies against several Omicron subvariants. However, the Fc-effector functions remain strong and stable, which may contribute to the continued effectiveness of vaccines. The study also highlights that individuals who were recently infected have stronger antibody responses, supporting the notion that hybrid immunity leads to improved humoral reactions.
Article
Multidisciplinary Sciences
Carolina Beltran-Pavez, Sebastian Riquelme-Barrios, Aaron Oyarzun-Arrau, Aracelly Gaete-Argel, Roxana Gonzalez-Stegmaier, Karina Cereceda-Solis, Adam Aguirre, Dante Travisany, Ricardo Palma-Vejares, Gonzalo P. Barriga, Aldo Gaggero, Constanza Martinez-Valdebenito, Nicole Le Corre, Marcela Ferres, Maria Elvira Balcells, Jorge Fernandez, Eugenio Ramirez, Franz Villarroel, Fernando Valiente-Echeverria, Ricardo Soto-Rifo
Summary: Chile has one of the worst numbers worldwide in terms of SARS-CoV-2 positive cases and COVID-19-related deaths per million inhabitants; characterization of neutralizing antibody (NAb) responses in the general population is critical to understanding immunity at the local level. The study found samples with decreased or enhanced neutralization activity against the D614G spike variant, indicating its relevance in host immunity. These data provide the first insights into NAb responses in individuals from Chile, serving as a guide for future studies in the country.
Article
Oncology
Ahmed Elgehama, Yixuan Wang, Ying Yu, Lin Zhou, Zhixiu Chen, Liwei Wang, Lijun Sun, Jian Gao, Biao Yu, Yan Shen, Qiang Xu
Summary: This study unravels the action mechanism of PTP1B in stabilizing Bcr-Abl1 protein and indicates that the PTP1B-Bcr-Abl1 interaction might be one of druggable targets for TKI-resistant CML with point mutations.
Article
Chemistry, Multidisciplinary
Youxi Chen, Guozhi Xiao, Dapeng Zhu, Biao Yu
Summary: Sepositoside A is a prototypical cyclic steroid glycoside with a hybrid 16-membered ring composed of the steroid skeleton and a 1,2-trans-linked trisaccharide. We report a convenient method to construct the strained 16-membered ring via Au(I)-catalyzed intramolecular addition of alcohol to epoxide, leading to two simplified analogues. Although a similar macroetherification in relevant steroid trisaccharides has been extensively studied, it has failed to provide the macrocyclic skeleton of Sepositoside A.
CHINESE JOURNAL OF CHEMISTRY
(2023)
Article
Chemistry, Multidisciplinary
Bingfeng Shi, Youxi Chen, Mingyu Geng, Dapeng Zhu, Biao Yu
Summary: Sepositoside A is a major cyclic steroid glycoside found in starfishes, featuring a strained 16-membered ring formed by a linear trisaccharide tethered to C3 and C6 of the steroid aglycone. Attempts to synthesize the desired steroid-pyranose etherate linkage and assemble the glycans stepwise have been unsuccessful. Alternative approaches to construct the steroid-pyranose etherate linkage will be explored in future articles.
CHINESE JOURNAL OF CHEMISTRY
(2023)
Article
Chemistry, Organic
Wu Hou, Mingyu Wang, Jing Wang, Xin Cao, Peng Xu, Biao Yu
Summary: In this study, a total of 31 norditerpenoid dilactone derivatives with modifications on the A- and C-rings were synthesized using 3 beta-hydroxydilactone as a common precursor. Cytotoxic evaluation revealed that norditerpenoid dilactones bearing 3 beta-OH and 1,2-beta-epoxide or 2,3-beta-epoxide showed promising inhibitory activities against tumor cell lines (IC50=1.0-6.5 μM).
ASIAN JOURNAL OF ORGANIC CHEMISTRY
(2023)
Article
Biology
Hang Qiao, Mingyu Xia, Yiyuan Cheng, Jintong Zhou, Li Zheng, Wei Li, Jing Wang, Pengfei Fang
Summary: This study reports the discovery of a novel drug, obafluorin, which can covalently inhibit the protein synthesis enzyme Threonyl-tRNA synthetase, offering potential for cancer and infectious disease treatment.
COMMUNICATIONS BIOLOGY
(2023)
Article
Cell Biology
Yuqi Lin, Biao Yu, Pengfei Fang, Jing Wang
Summary: Autophagy is a cellular stress response mechanism that cancer cells often exploit for survival and growth under unfavorable conditions. It also contributes to tumor resistance to various cancer therapies. Inhibition of autophagy shows promise as a tumor treatment strategy, but effective clinical autophagy inhibitors are still lacking. Most drug development efforts have focused on enzymes involved in autophagy, but our discovery of Eltrombopag, which directly inhibits the transcription factor TFEB, provides a new approach for inhibiting autophagy. This drug improves the therapeutic effect of Temozolomide on glioblastoma treatment, further highlighting the importance of autophagy inhibition in cancer treatment.
Article
Chemistry, Multidisciplinary
Dapeng Zhu, Mingyu Geng, Dacheng Shen, Biao Yu
Summary: This article presents a formal total synthesis study of starfish cyclic steroid glycosides 1 and 2 isolated from the Pacific starfish Echinaster Luzonicus. The synthetic route is highly modular and versatile, involving Au(I)-catalyzed intramolecular glycosylation for constructing the 16-membered macrocycles, efficient installation of unsaturated sugar moieties using ortho-hexynylbenzoates, post-oxidation elaboration of the glucuronic acid unit, and de novo synthesis of the ether-linked pyranose unit.
CHINESE JOURNAL OF CHEMISTRY
(2023)
Article
Chemistry, Multidisciplinary
Xiaojuan Zhang, Peng Xu, Zhengbing Zhou, Yazhou Zhang, Biao Yu, Yugen Zhu
Summary: Due to the complexity and diversity of carbohydrates, efficient methods for homogeneous oligosaccharides are limited. Chemical synthesis is a reliable approach for accessing homogeneous samples, relying on glycosylation reactions. This study presents a novel leaving group, 8-phenylethynyl-1-naphthoate, which enables efficient glycosylation reactions under mild gold(I)-catalysis. The unique base-stability of the anomeric naphthoate group allows compatibility with various chemical transformations, and the protocol allows for minimally protected glycosylation processes. Mechanistic studies explain the characteristics of 8-phenylethynyl-1-naphthoate.
CHINESE JOURNAL OF CHEMISTRY
(2023)
Article
Chemistry, Multidisciplinary
Wei Liu, Ziqiang Wang, Tayyab Gulzar, Xiaodong Zhang, Guoping Ding, Peng Xu, Biao Yu
Summary: We have revealed that EPP glycosides can be utilized as glycosylation donors through an unprecedented activation mechanism. We further report that EPP glycosides without the 3,5-dimethyl groups, previously installed to prevent side reactions, can also undergo effective glycosylation. By employing an EPP 2-azidoglucoside as a donor, we have successfully constructed the challenging alpha-GlcN-(1 -> 4)-GlcA linkage, leading to a heparin tri-saccharides precursor.
PURE AND APPLIED CHEMISTRY
(2023)
Article
Chemistry, Organic
Yan Xia, Yingjie Wang, Zhaolun Zhang, Tayyab Gulzar, Yuqi Lin, Jing Wang, Dapeng Zhu, Biao Yu
Summary: The synthesis of neopetrosins A and C, two 2-indolyl C-a-D- mannopyranosides, and their congeners has been achieved via a direct Ni/photoredox-catalyzed reductive coupling of 3-methoxycarbonyl-2-iodo-1H-indoles with pyranosyl bromides.
Article
Cell Biology
Zaizhou Liu, Kaige Chen, Jun Dai, Peng Xu, Wei Sun, Wanlin Liu, Zhixin Zhao, Steven P. Bennett, Peifeng Li, Tiancheng Ma, Yuqi Lin, Akinori Kawakami, Jing Yu, Fei Wang, Chunxi Wang, Miao Li, Peter Chase, Peter Hodder, Timothy P. Spicer, Louis Scampavia, Chunyang Cao, Lifeng Pan, Jiajia Dong, Yong Chen, Biao Yu, Min Guo, Pengfei Fang, David E. Fisher, Jing Wang
Summary: The researchers discovered that the structure of MITF is hyperdynamic and vulnerable to dimer-disrupting mutations. They also identified a small molecule compound, TT-012, that specifically binds to MITF and inhibits its transcriptional activity in melanoma cells. Furthermore, TT-012 inhibits the growth of high-MITF melanoma cells and suppresses tumor growth and metastasis in animal models. This study provides insights into the unique dimer interface of the melanoma oncoprotein MITF and presents a potential therapeutic approach to suppress MITF activity.
Article
Chemistry, Organic
Wei Liu, Zhifei Hu, Peng Xu, Biao Yu
Summary: Here, we presented a convenient procedure to prepare EPP glycosides and their application in the synthesis of the clinically approved anticoagulant fondaparinux. Additionally, we successfully achieved the synthesis of heparin-like tetrasaccharides using EPP glycosides in a one-pot orthogonal glycosylation reaction.