Whole Genome Sequence-Based Prediction of Resistance Determinants in High-Level Multidrug-Resistant Campylobacter jejuni Isolates in Lithuania

Mobile resistome of human gut and pathogen drives anthropogenic bloom of antibiotic resistance

(2020) Kihyun Lee et al.   Microbiome

Campylobacter gastroenteritis in children in north-eastern Israel comparison with other common pathogens

(2020) Waheeb Sakran et al.   Scientific Reports

Horizontal Gene Transfer: From Evolutionary Flexibility to Disease Progression

(2020) Melissa Emamalipour et al.   Frontiers in Cell and Developmental Biology

Review on Major Food-Borne Zoonotic Bacterial Pathogens

(2020) Engidaw Abebe et al.   Journal of Tropical Medicine

Horizontal Gene Transfer and Its Association with Antibiotic Resistance in the Genus Aeromonas spp.

(2019) J. Manuel Bello-López et al.   Microorganisms

CARD 2020: antibiotic resistome surveillance with the comprehensive antibiotic resistance database

(2019) Brian P Alcock et al.   NUCLEIC ACIDS RESEARCH

Population genomics of bacterial host adaptation

(2018) Samuel K. Sheppard et al.   NATURE REVIEWS GENETICS

Mobile Genetic Elements Associated with Antimicrobial Resistance

(2018) Sally R. Partridge et al.   CLINICAL MICROBIOLOGY REVIEWS

IslandViewer 4: expanded prediction of genomic islands for larger-scale datasets

(2017) Claire Bertelli et al.   NUCLEIC ACIDS RESEARCH

Structures and transport dynamics of a Campylobacter jejuni multidrug efflux pump

(2017) Chih-Chia Su et al.   Nature Communications

The chromosomal organization of horizontal gene transfer in bacteria

(2017) Pedro H. Oliveira et al.   Nature Communications

Multidrug-Resistant Bacteria in the Community

(2016) David van Duin et al.   INFECTIOUS DISEASE CLINICS OF NORTH AMERICA

BlastKOALA and GhostKOALA: KEGG Tools for Functional Characterization of Genome and Metagenome Sequences

(2016) Minoru Kanehisa et al.   JOURNAL OF MOLECULAR BIOLOGY

Multidrug-Resistant Pathogens in the Food Supply

(2015) Marjorie E. Doyle   Foodborne Pathogens and Disease

Prevalence and genotypes of Campylobacter jejuni from urban environmental sources in comparison with clinical isolates from children

(2014) S. Ramonaite et al.   JOURNAL OF MEDICAL MICROBIOLOGY

The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)

(2013) Ross Overbeek et al.   NUCLEIC ACIDS RESEARCH

PathogenFinder - Distinguishing Friend from Foe Using Bacterial Whole Genome Sequence Data

(2013) Salvatore Cosentino et al.   PLoS One

Identification of acquired antimicrobial resistance genes

(2012) E. Zankari et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Ribosomal multilocus sequence typing: universal characterization of bacteria from domain to strain

(2012) K. A. Jolley et al.   MICROBIOLOGY-SGM

Multidrug-resistant, extensively drug-resistant and pandrug-resistant bacteria: an international expert proposal for interim standard definitions for acquired resistance

(2011) A.-P. Magiorakos et al.   CLINICAL MICROBIOLOGY AND INFECTION

Interactive microbial genome visualization with GView

(2010) Aaron Petkau et al.   BIOINFORMATICS

The RAST Server: Rapid Annotations using Subsystems Technology

(2008) Ramy K Aziz et al.   BMC GENOMICS

CRISPRcompar: a website to compare clustered regularly interspaced short palindromic repeats

(2008) I. Grissa et al.   NUCLEIC ACIDS RESEARCH