Genetic diversity of clinical and environmental Mucorales isolates obtained from an investigation of mucormycosis cases among solid organ transplant recipients

The use of genome sequencing to investigate an outbreak of hospital‐acquired mucormycosis in transplant patients

(2019) Caitlyn Marek et al.   Transplant Infectious Disease

Whole-genome sequencing and analyses identify high genetic heterogeneity, diversity and endemicity of rotavirus genotype P[6] strains circulating in Africa

(2018) Martin M. Nyaga et al.   INFECTION GENETICS AND EVOLUTION

Outbreak of Invasive Wound Mucormycosis in a Burn Unit Due to Multiple Strains of Mucor circinelloides f. circinelloides Resolved by Whole-Genome Sequencing

(2018) Dea Garcia-Hermoso et al.   mBio

Phylogenetic and Phylogenomic Definition of Rhizopus Species

(2018) Andrii P. Gryganskyi et al.   G3-Genes Genomes Genetics

Clustal Omega for making accurate alignments of many protein sequences

(2017) Fabian Sievers et al.   PROTEIN SCIENCE

Seasonal clustering of sinopulmonary mucormycosis in patients with hematologic malignancies at a large comprehensive cancer center

(2017) Shobini Sivagnanam et al.   Antimicrobial Resistance and Infection Control

Invasive Cutaneous Rhizopus Infections in an Immunocompromised Patient Population Associated with Hospital Laundry Carts

(2016) Lisa J. Teal et al.   INFECTION CONTROL AND HOSPITAL EPIDEMIOLOGY

An integrated genomic and transcriptomic survey of mucormycosis-causing fungi

(2016) Marcus C. Chibucos et al.   Nature Communications

Notes from the Field: Probable Mucormycosis Among Adult Solid Organ Transplant Recipients at an Acute Care Hospital — Pennsylvania, 2014–2015

(2016) Shannon A. Novosad et al.   MMWR-MORBIDITY AND MORTALITY WEEKLY REPORT

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

Hospital Outbreak of Pulmonary and Cutaneous Zygomycosis due to Contaminated Linen Items From Substandard Laundry

(2015) Vincent C. C. Cheng et al.   CLINICAL INFECTIOUS DISEASES

Healthcare-associated outbreaks due to Mucorales and other uncommon fungi

(2015) Setareh Davoudi et al.   EUROPEAN JOURNAL OF CLINICAL INVESTIGATION

Investigation and Management of a Rhizomucor Outbreak in a Pediatric Cancer Hospital in Egypt

(2015) Hadir A. El-Mahallawy et al.   PEDIATRIC BLOOD & CANCER

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Genome sequence and transcriptome analyses of the thermophilic zygomycete fungus Rhizomucor miehei

(2014) Peng Zhou et al.   BMC GENOMICS

Mucormycosis Outbreak Associated With Hospital Linens

(2014) Jonathan Duffy et al.   PEDIATRIC INFECTIOUS DISEASE JOURNAL

Analysis of a Food-Borne Fungal Pathogen Outbreak: Virulence and Genome of a Mucor circinelloides Isolate from Yogurt

(2014) S. C. Lee et al.   mBio

PhyloSift: phylogenetic analysis of genomes and metagenomes

(2014) Aaron E. Darling et al.   PeerJ

Healthcare-Associated Mucormycosis

(2012) Blandine Rammaert et al.   CLINICAL INFECTIOUS DISEASES

Reclassification of the Candida haemulonii Complex as Candida haemulonii (C. haemulonii Group I), C. duobushaemulonii sp. nov. (C. haemulonii Group II), and C. haemulonii var. vulnera var. nov.: Three Multiresistant Human Pathogenic Yeasts

(2012) E. Cendejas-Bueno et al.   JOURNAL OF CLINICAL MICROBIOLOGY

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Outbreak of cutaneous zygomycosis associated with the use of adhesive tape in haematology patients

(2012) C. Lalayanni et al.   JOURNAL OF HOSPITAL INFECTION

Necrotizing Cutaneous Mucormycosis after a Tornado in Joplin, Missouri, in 2011

(2012) Robyn Neblett Fanfair et al.   NEW ENGLAND JOURNAL OF MEDICINE

PanOCT: automated clustering of orthologs using conserved gene neighborhood for pan-genomic analysis of bacterial strains and closely related species

(2012) Derrick E. Fouts et al.   NUCLEIC ACIDS RESEARCH

Whole Genome Sequence Typing to Investigate the Apophysomyces Outbreak following a Tornado in Joplin, Missouri, 2011

(2012) Kizee A. Etienne et al.   PLoS One

A cluster of mucormycosis infections in hematology patients: challenges in investigation and control of invasive mold infections in high-risk patient populations

(2011) Eloisa Llata et al.   DIAGNOSTIC MICROBIOLOGY AND INFECTIOUS DISEASE

Efficient de novo assembly of single-cell bacterial genomes from short-read data sets

(2011) Hamidreza Chitsaz et al.   NATURE BIOTECHNOLOGY

Safety and Outcomes of Open-Label Deferasirox Iron Chelation Therapy for Mucormycosis

(2009) B. Spellberg et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Outbreaks of zygomycosis in hospitals

(2009) A. Antoniadou   CLINICAL MICROBIOLOGY AND INFECTION

Investigation and management of an outbreak of mucormycosis in a paediatric oncology unit

(2008) D. Garner et al.   JOURNAL OF HOSPITAL INFECTION

Economic burden of mucormycosis in the United States: can a vaccine be cost-effective?

(2008) Ashraf S. Ibrahim et al.   MEDICAL MYCOLOGY