Hidden heterogeneity and co‐occurrence networks of soil prokaryotic communities revealed at the scale of individual soil aggregates
出版年份 2020 全文链接
标题
Hidden heterogeneity and co‐occurrence networks of soil prokaryotic communities revealed at the scale of individual soil aggregates
作者
关键词
-
出版物
MicrobiologyOpen
Volume -, Issue -, Pages -
出版商
Wiley
发表日期
2020-12-26
DOI
10.1002/mbo3.1144
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Biogeography of soil microbial habitats across France
- (2020) Battle Karimi et al. GLOBAL ECOLOGY AND BIOGEOGRAPHY
- Soil aggregate microbial communities: Towards understanding microbiome interactions at biologically relevant scales
- (2019) Regina L. Wilpiszeski et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Taxon-specific fungal preference for distinct soil particle size fractions
- (2019) Michael Hemkemeyer et al. EUROPEAN JOURNAL OF SOIL BIOLOGY
- Towards an integrative understanding of soil biodiversity
- (2019) Madhav P. Thakur et al. BIOLOGICAL REVIEWS
- The influence of aggregate size fraction and horizon position on microbial community composition
- (2018) Aaron Fox et al. APPLIED SOIL ECOLOGY
- Greatest soil microbial diversity found in micro-habitats
- (2018) Elizabeth M. Bach et al. SOIL BIOLOGY & BIOCHEMISTRY
- Bacterial Preferences for Specific Soil Particle Size Fractions Revealed by Community Analyses
- (2018) Michael Hemkemeyer et al. Frontiers in Microbiology
- Biogeography of soil bacteria and archaea across France
- (2018) Battle Karimi et al. Science Advances
- Linking Nitrogen Load to the Structure and Function of Wetland Soil and Rhizosphere Microbial Communities
- (2018) Eric R. Hester et al. mSystems
- Chemical nature of soil organic carbon under different long-term fertilization regimes is coupled with changes in the bacterial community composition in a Calcaric Fluvisol
- (2018) Dandan Li et al. BIOLOGY AND FERTILITY OF SOILS
- Soil aggregates as massively concurrent evolutionary incubators
- (2017) Matthias C Rillig et al. ISME Journal
- The microbial habitat in soil: Scale, heterogeneity and functional consequences
- (2017) Naoise Nunan JOURNAL OF PLANT NUTRITION AND SOIL SCIENCE
- Microbiome Datasets Are Compositional: And This Is Not Optional
- (2017) Gregory B. Gloor et al. Frontiers in Microbiology
- An evaluation of multiple annealing and looping based genome amplification using a synthetic bacterial community
- (2016) Yong Wang et al. ACTA OCEANOLOGICA SINICA
- It's all relative: analyzing microbiome data as compositions
- (2016) Gregory B. Gloor et al. ANNALS OF EPIDEMIOLOGY
- Microbial interactions and community assembly at microscales
- (2016) Otto X Cordero et al. CURRENT OPINION IN MICROBIOLOGY
- Correlation detection strategies in microbial data sets vary widely in sensitivity and precision
- (2016) Sophie Weiss et al. ISME Journal
- DADA2: High-resolution sample inference from Illumina amplicon data
- (2016) Benjamin J Callahan et al. NATURE METHODS
- Network analysis reveals functional redundancy and keystone taxa amongst bacterial and fungal communities during organic matter decomposition in an arable soil
- (2016) Samiran Banerjee et al. SOIL BIOLOGY & BIOCHEMISTRY
- Inherent bacterial DNA contamination of extraction and sequencing reagents may affect interpretation of microbiota in low bacterial biomass samples
- (2016) Angela Glassing et al. Gut Pathogens
- zCompositions — R package for multivariate imputation of left-censored data under a compositional approach
- (2015) Javier Palarea-Albaladejo et al. CHEMOMETRICS AND INTELLIGENT LABORATORY SYSTEMS
- The structure of microbial community in aggregates of a typical chernozem aggregates under contrasting variants of its agricultural use
- (2015) E. A. Ivanova et al. EURASIAN SOIL SCIENCE
- The spatial distribution of exoenzyme activities across the soil micro-landscape, as measured in micro- and macro-aggregates, and ecosystem processes
- (2015) Haryun Kim et al. SOIL BIOLOGY & BIOCHEMISTRY
- Soil particle size fractions harbour distinct microbial communities and differ in potential for microbial mineralisation of organic pollutants
- (2015) Michael Hemkemeyer et al. SOIL BIOLOGY & BIOCHEMISTRY
- Improved Bacterial 16S rRNA Gene (V4 and V4-5) and Fungal Internal Transcribed Spacer Marker Gene Primers for Microbial Community Surveys
- (2015) William Walters et al. mSystems
- Reagent and laboratory contamination can critically impact sequence-based microbiome analyses
- (2014) Susannah J Salter et al. BMC BIOLOGY
- Spatial Ecology of Bacteria at the Microscale in Soil
- (2014) Xavier Raynaud et al. PLoS One
- Limitations and recommendations for successful DNA extraction from forensic soil samples: A review
- (2014) Jennifer M. Young et al. SCIENCE & JUSTICE
- Intra-aggregate Pore Structure Influences Phylogenetic Composition of Bacterial Community in Macroaggregates
- (2014) Alexandra N. Kravchenko et al. SOIL SCIENCE SOCIETY OF AMERICA JOURNAL
- Microscale evidence for a high decrease of soil bacterial density and diversity by cropping
- (2013) Florentin Constancias et al. Agronomy for Sustainable Development
- Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform
- (2013) James J. Kozich et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Systematic evaluation of bias in microbial community profiles induced by whole genome amplification
- (2013) Susana O. L. Direito et al. ENVIRONMENTAL MICROBIOLOGY
- Linking microbial community structure to β-glucosidic function in soil aggregates
- (2013) Vanessa L Bailey et al. ISME Journal
- Micrometer-scale physical structure and microbial composition of soil macroaggregates
- (2013) Vanessa L. Bailey et al. SOIL BIOLOGY & BIOCHEMISTRY
- Acidobacterial community responses to agricultural management of soybean in Amazon forest soils
- (2012) Acácio A. Navarrete et al. FEMS MICROBIOLOGY ECOLOGY
- Microbial interactions: from networks to models
- (2012) Karoline Faust et al. NATURE REVIEWS MICROBIOLOGY
- Microbial Co-occurrence Relationships in the Human Microbiome
- (2012) Karoline Faust et al. PLoS Computational Biology
- Long-term fertilization effects on crop yields, soil fertility and sustainability in the Static Fertilization Experiment Bad Lauchstädt under climatic conditions 2001–2010
- (2012) Ines Merbach et al. Archives of Agronomy and Soil Science
- The Thaumarchaeota: an emerging view of their phylogeny and ecophysiology
- (2011) Michael Pester et al. CURRENT OPINION IN MICROBIOLOGY
- The bacterial biogeography of British soils
- (2011) Robert I. Griffiths et al. ENVIRONMENTAL MICROBIOLOGY
- Soil-specific limitations for access and analysis of soil microbial communities by metagenomics
- (2011) Nathalie Lombard et al. FEMS MICROBIOLOGY ECOLOGY
- Using network analysis to explore co-occurrence patterns in soil microbial communities
- (2011) Albert Barberán et al. ISME Journal
- The under-recognized dominance of Verrucomicrobia in soil bacterial communities
- (2011) Gaddy T. Bergmann et al. SOIL BIOLOGY & BIOCHEMISTRY
- Pyrosequencing and mid-infrared spectroscopy reveal distinct aggregate stratification of soil bacterial communities and organic matter composition
- (2011) Marko Davinic et al. SOIL BIOLOGY & BIOCHEMISTRY
- Effects of fertilization and soil management on crop yields and carbon stabilization in soils. A review
- (2010) B. Ludwig et al. Agronomy for Sustainable Development
- Microbial Biogeography: From Taxonomy to Traits
- (2008) J. L. Green et al. SCIENCE
Become a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get StartedAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started