Real-Time Culture-Independent Microbial Profiling Onboard the International Space Station Using Nanopore Sequencing

A preliminary study on the potential of Nanopore MinION and Illumina MiSeq 16S rRNA gene sequencing to characterize building-dust microbiomes

(2020) Anders B. Nygaard et al.   Scientific Reports

Off Earth Identification of Bacterial Populations Using 16S rDNA Nanopore Sequencing

(2020) Aaron S. Burton et al.   Genes

GC bias affects genomic and metagenomic reconstructions, underrepresenting GC-poor organisms

(2020) Patrick Denis Browne et al.   GigaScience

Crewmember microbiome may influence microbial composition of ISS habitable surfaces

(2020) Aram Avila-Herrera et al.   PLoS One

The influence of spaceflight on the astronaut salivary microbiome and the search for a microbiome biomarker for viral reactivation

(2020) Camilla Urbaniak et al.   Microbiome

A longitudinal study of the development of the saliva microbiome in infants 2 days to 5 years compared to the microbiome in adolescents

(2020) Pernilla Lif Holgerson et al.   Scientific Reports

NanoCLUST: a species-level analysis of 16S rRNA nanopore sequencing data

(2020) Héctor Rodríguez-Pérez et al.   BIOINFORMATICS

Rapid bacterial identification by direct PCR amplification of 16S rRNA genes using the MinIONTM nanopore sequencer

(2019) Shinichi Kai et al.   FEBS Open Bio

Staphylococcus saccharolyticus Isolated From Blood Cultures and Prosthetic Joint Infections Exhibits Excessive Genome Decay

(2019) Holger Brüggemann et al.   Frontiers in Microbiology

A Comparison of Three Different Bioinformatics Analyses of the 16S–23S rRNA Encoding Region for Bacterial Identification

(2019) Nilay Peker et al.   Frontiers in Microbiology

Characterization of the total and viable bacterial and fungal communities associated with the International Space Station surfaces

(2019) Aleksandra Checinska Sielaff et al.   Microbiome

High-throughput amplicon sequencing of the full-length 16S rRNA gene with single-nucleotide resolution

(2019) Benjamin J Callahan et al.   NUCLEIC ACIDS RESEARCH

Reading canonical and modified nucleobases in 16S ribosomal RNA using nanopore native RNA sequencing

(2019) Andrew M. Smith et al.   PLoS One

Study of the impact of long-duration space missions at the International Space Station on the astronaut microbiome

(2019) Alexander A. Voorhies et al.   Scientific Reports

Space Station conditions are selective but do not alter microbial characteristics relevant to human health

(2019) Maximilian Mora et al.   Nature Communications

Evaluation of 16S rRNA gene sequencing for species and strain-level microbiome analysis

(2019) Jethro S. Johnson et al.   Nature Communications

Minimap2: pairwise alignment for nucleotide sequences

(2018) Heng Li   BIOINFORMATICS

NanoPack: visualizing and processing long-read sequencing data

(2018) Wouter De Coster et al.   BIOINFORMATICS

Streptococcus pneumoniae: transmission, colonization and invasion

(2018) Jeffrey N. Weiser et al.   NATURE REVIEWS MICROBIOLOGY

KatharoSeq Enables High-Throughput Microbiome Analysis from Low-Biomass Samples

(2018) Jeremiah J. Minich et al.   mSystems

Exposure to an extreme environment comes at a sensorimotor cost

(2018) Kyoung Jae Kim et al.   NPJ Microgravity

Strains, functions and dynamics in the expanded Human Microbiome Project

(2017) Jason Lloyd-Price et al.   NATURE

Microgravity validation of a novel system for RNA isolation and multiplex quantitative real time PCR analysis of gene expression on the International Space Station

(2017) Macarena Parra et al.   PLoS One

A microbial survey of the International Space Station (ISS)

(2017) Jenna M. Lang et al.   PeerJ

Successful amplification of DNA aboard the International Space Station

(2017) Anna-Sophia Boguraev et al.   NPJ Microgravity

Nanopore DNA Sequencing and Genome Assembly on the International Space Station

(2017) Sarah L. Castro-Wallace et al.   Scientific Reports

Species-level resolution of 16S rRNA gene amplicons sequenced through the MinION™ portable nanopore sequencer

(2016) Alfonso Benítez-Páez et al.   GigaScience

Four-year bacterial monitoring in the International Space Station—Japanese Experiment Module “Kibo” with culture-independent approach

(2016) Tomoaki Ichijo et al.   NPJ Microgravity

The truth about metagenomics: quantifying and counteracting bias in 16S rRNA studies

(2015) J Paul Brooks et al.   BMC MICROBIOLOGY

Improved data analysis for the MinION nanopore sequencer

(2015) Miten Jain et al.   NATURE METHODS

qgraph: Network Visualizations of Relationships in Psychometric Data

(2015) Sacha Epskamp et al.   Journal of Statistical Software

Ecological Succession and Viability of Human-Associated Microbiota on Restroom Surfaces

(2014) Sean M. Gibbons et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Size-selective DNA separation: Recovery spectra help determine the sodium chloride (NaCl) and polyethylene glycol (PEG) concentrations required

(2014) Zhangyong He et al.   Biotechnology Journal

Microbial Monitoring of Crewed Habitats in Space—Current Status and Future Perspectives

(2014) Nobuyasu Yamaguchi et al.   MICROBES AND ENVIRONMENTS

The skin microbiome: potential for novel diagnostic and therapeutic approaches to cutaneous disease

(2014) Elizabeth Grice   SEMINARS IN CUTANEOUS MEDICINE AND SURGERY

Diversity of Bacterial Communities of Fitness Center Surfaces in a U.S. Metropolitan Area

(2014) Nabanita Mukherjee et al.   International Journal of Environmental Research and Public Health

Methyloceanibacter caenitepidi gen. nov., sp. nov., a facultatively methylotrophic bacterium isolated from marine sediments near a hydrothermal vent

(2013) M. Takeuchi et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Salinisphaera japonica sp. nov., a moderately halophilic bacterium isolated from the surface of a deep-sea fish, Malacocottus gibber, and emended description of the genus Salinisphaera

(2012) Y. Shimane et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Structure, function and diversity of the healthy human microbiome

(2012)   NATURE

The Human Oral Microbiome

(2010) F. E. Dewhirst et al.   JOURNAL OF BACTERIOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Aliihoeflea aestuarii gen. nov., sp. nov., a novel bacterium isolated from tidal flat sediment

(2008) Seong Woon Roh et al.   JOURNAL OF MICROBIOLOGY