Adaptation is influenced by the complexity of environmental change during evolution in a dynamic environment

High-resolution lineage tracking reveals travelling wave of adaptation in laboratory yeast

(2019) Alex N. Nguyen Ba et al.   NATURE

Single nucleotide mapping of trait space reveals Pareto fronts that constrain adaptation

(2019) Yuping Li et al.   Nature Ecology & Evolution

Efficient, continuous mutagenesis in human cells using a pseudo-random DNA editor

(2019) Haiqi Chen et al.   NATURE BIOTECHNOLOGY

Hidden Complexity of Yeast Adaptation under Simple Evolutionary Conditions

(2018) Yuping Li et al.   CURRENT BIOLOGY

Genomics of cellular proliferation in periodic environmental fluctuations

(2018) Jérôme Salignon et al.   Molecular Systems Biology

Experimental Evolution as a High-Throughput Screen for Genetic Adaptations

(2018) Vaughn S. Cooper   mSphere

The dynamics of molecular evolution over 60,000 generations

(2017) Benjamin H. Good et al.   NATURE

Development of a Comprehensive Genotype-to-Fitness Map of Adaptation-Driving Mutations in Yeast

(2016) Sandeep Venkataram et al.   CELL

Sex speeds adaptation by altering the dynamics of molecular evolution

(2016) Michael J. McDonald et al.   NATURE

Diversity of immune strategies explained by adaptation to pathogen statistics

(2016) Andreas Mayer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Spatiotemporal microbial evolution on antibiotic landscapes

(2016) M. Baym et al.   SCIENCE

iSeq: A New Double-Barcode Method for Detecting Dynamic Genetic Interactions in Yeast

(2016) Mia Jaffe et al.   G3-Genes Genomes Genetics

Manipulating the Selection Forces during Affinity Maturation to Generate Cross-Reactive HIV Antibodies

(2015) Shenshen Wang et al.   CELL

Quantitative evolutionary dynamics using high-resolution lineage tracking

(2015) Sasha F. Levy et al.   NATURE

Elucidating the molecular architecture of adaptation via evolve and resequence experiments

(2015) Anthony Long et al.   NATURE REVIEWS GENETICS

The Evolution of Phenotypic Switching in Subdivided Populations

(2014) Oana Carja et al.   GENETICS

Experimental microbial evolution: history and conceptual underpinnings

(2014) Julian Adams et al.   GENOMICS

A model for the generation and transmission of variations in evolution

(2014) O. Rivoire et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Alternating antibiotic treatments constrain evolutionary paths to multidrug resistance

(2014) Seungsoo Kim et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Global epistasis makes adaptation predictable despite sequence-level stochasticity

(2014) S. Kryazhimskiy et al.   SCIENCE

Pervasive genetic hitchhiking and clonal interference in forty evolving yeast populations

(2013) Gregory I. Lang et al.   NATURE

Whole Genome, Whole Population Sequencing Reveals That Loss of Signaling Networks Is the Major Adaptive Strategy in a Constant Environment

(2013) Daniel J. Kvitek et al.   PLoS Genetics

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

(2012) Pablo Cingolani et al.   FLY

Bet hedging or not? A guide to proper classification of microbial survival strategies

(2011) Imke G. de Jong et al.   BIOESSAYS

Evolutionary paths to antibiotic resistance under dynamically sustained drug selection

(2011) Erdal Toprak et al.   NATURE GENETICS

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Antibiotic resistance and its cost: is it possible to reverse resistance?

(2010) Dan I. Andersson et al.   NATURE REVIEWS MICROBIOLOGY

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Evolution of Stochastic Switching Rates in Asymmetric Fitness Landscapes

(2009) Marcel Salathé et al.   GENETICS

Experimental evolution of bet hedging

(2009) Hubertus J. E. Beaumont et al.   NATURE

Adaptive prediction of environmental changes by microorganisms

(2009) Amir Mitchell et al.   NATURE

Stochastic switching as a survival strategy in fluctuating environments

(2008) Murat Acar et al.   NATURE GENETICS

Molecular characterization of clonal interference during adaptive evolution in asexual populations of Saccharomyces cerevisiae

(2008) Katy C Kao et al.   NATURE GENETICS