Thermostability profiling of MHC-bound peptides: a new dimension in immunopeptidomics and aid for immunotherapy design
出版年份 2020 全文链接
标题
Thermostability profiling of MHC-bound peptides: a new dimension in immunopeptidomics and aid for immunotherapy design
作者
关键词
-
出版物
Nature Communications
Volume 11, Issue 1, Pages -
出版商
Springer Science and Business Media LLC
发表日期
2020-12-09
DOI
10.1038/s41467-020-20166-4
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Peptide Presentation to T Cells: Solving the Immunogenic Puzzle
- (2020) Nathan P. Croft BIOESSAYS
- Mutation position is an important determinant for predicting cancer neoantigens
- (2020) Aude-Hélène Capietto et al. JOURNAL OF EXPERIMENTAL MEDICINE
- Identifying drug targets in tissues and whole blood with thermal-shift profiling
- (2020) Jessica Perrin et al. NATURE BIOTECHNOLOGY
- Immunoproteasome expression is associated with better prognosis and response to checkpoint therapies in melanoma
- (2020) Shelly Kalaora et al. Nature Communications
- Multiplexed relative and absolute quantitative immunopeptidomics reveals MHC I repertoire alterations induced by CDK4/6 inhibition
- (2020) Lauren E. Stopfer et al. Nature Communications
- Most viral peptides displayed by class I MHC on infected cells are immunogenic
- (2019) Nathan P. Croft et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Mass spectrometry–based identification of MHC-bound peptides for immunopeptidomics
- (2019) Anthony W. Purcell et al. Nature Protocols
- Improved peptide-MHC class II interaction prediction through integration of eluted ligand and peptide affinity data
- (2019) Christian Garde et al. IMMUNOGENETICS
- CETSA in integrated proteomics studies of cellular processes
- (2019) Nayana Prabhu et al. CURRENT OPINION IN CHEMICAL BIOLOGY
- MHCflurry: Open-Source Class I MHC Binding Affinity Prediction
- (2018) Timothy J. O'Donnell et al. Cell Systems
- Data‐independent acquisition‐based SWATH‐MS for quantitative proteomics: a tutorial
- (2018) Christina Ludwig et al. Molecular Systems Biology
- Predicting T cell recognition of MHC class I restricted neoepitopes
- (2018) Zeynep Koşaloğlu-Yalçın et al. OncoImmunology
- The PRIDE database and related tools and resources in 2019: improving support for quantification data
- (2018) Yasset Perez-Riverol et al. NUCLEIC ACIDS RESEARCH
- The Immune Epitope Database (IEDB): 2018 update
- (2018) Randi Vita et al. NUCLEIC ACIDS RESEARCH
- HLA-B57 micropolymorphism defines the sequence and conformational breadth of the immunopeptidome
- (2018) Patricia T. Illing et al. Nature Communications
- High-Throughput Stability Screening of Neoantigen/HLA Complexes Improves Immunogenicity Predictions
- (2018) Dylan T. Blaha et al. Cancer Immunology Research
- NetMHCpan-4.0: Improved Peptide–MHC Class I Interaction Predictions Integrating Eluted Ligand and Peptide Binding Affinity Data
- (2017) Vanessa Jurtz et al. JOURNAL OF IMMUNOLOGY
- In situ click chemistry generation of cyclooxygenase-2 inhibitors
- (2017) Atul Bhardwaj et al. Nature Communications
- Deciphering HLA-I motifs across HLA peptidomes improves neo-antigen predictions and identifies allostery regulating HLA specificity
- (2017) Michal Bassani-Sternberg et al. PLoS Computational Biology
- Differential scanning fluorimetry based assessments of the thermal and kinetic stability of peptide–MHC complexes
- (2016) Lance M. Hellman et al. JOURNAL OF IMMUNOLOGICAL METHODS
- Pan-Specific Prediction of Peptide–MHC Class I Complex Stability, a Correlate of T Cell Immunogenicity
- (2016) Michael Rasmussen et al. JOURNAL OF IMMUNOLOGY
- Targeting of cancer neoantigens with donor-derived T cell receptor repertoires
- (2016) E. Stronen et al. SCIENCE
- Present Yourself! By MHC Class I and MHC Class II Molecules
- (2016) Kenneth L. Rock et al. TRENDS IN IMMUNOLOGY
- Evolution of Orbitrap Mass Spectrometry Instrumentation
- (2015) Shannon Eliuk et al. Annual Review of Analytical Chemistry
- Gapped sequence alignment using artificial neural networks: application to the MHC class I system
- (2015) Massimo Andreatta et al. BIOINFORMATICS
- Simultaneous Quantification of Viral Antigen Expression Kinetics Using Data-Independent (DIA) Mass Spectrometry
- (2015) Nathan P. Croft et al. MOLECULAR & CELLULAR PROTEOMICS
- Revisiting the Arthritogenic Peptide Theory: Quantitative Not Qualitative Changes in the Peptide Repertoire of HLA-B27 Allotypes
- (2015) Ralf B. Schittenhelm et al. Arthritis & Rheumatology
- A Novel Trafficking Signal within the HLA-C Cytoplasmic Tail Allows Regulated Expression upon Differentiation of Macrophages
- (2014) M. R. Schaefer et al. JOURNAL OF IMMUNOLOGY
- Recognition of Distinct Cross-Reactive Virus-Specific CD8+ T Cells Reveals a Unique TCR Signature in a Clinical Setting
- (2014) T. H. O. Nguyen et al. JOURNAL OF IMMUNOLOGY
- Allele frequency net 2015 update: new features for HLA epitopes, KIR and disease and HLA adverse drug reaction associations
- (2014) Faviel F. González-Galarza et al. NUCLEIC ACIDS RESEARCH
- Tracking cancer drugs in living cells by thermal profiling of the proteome
- (2014) M. M. Savitski et al. SCIENCE
- A comprehensive analysis of constitutive naturally processed and presentedHLA-C*04:01(Cw4) - specific peptides
- (2014) R. B. Schittenhelm et al. TISSUE ANTIGENS
- Properties of MHC Class I Presented Peptides That Enhance Immunogenicity
- (2013) Jorg J. A. Calis et al. PLoS Computational Biology
- Peptide-MHC class I stability is a better predictor than peptide affinity of CTL immunogenicity
- (2012) Mikkel Harndahl et al. EUROPEAN JOURNAL OF IMMUNOLOGY
- Seq2Logo: a method for construction and visualization of amino acid binding motifs and sequence profiles including sequence weighting, pseudo counts and two-sided representation of amino acid enrichment and depletion
- (2012) Martin Christen Frølund Thomsen et al. NUCLEIC ACIDS RESEARCH
- Using iRT, a normalized retention time for more targeted measurement of peptides
- (2012) Claudia Escher et al. PROTEOMICS
- Skyline: an open source document editor for creating and analyzing targeted proteomics experiments
- (2010) Brendan MacLean et al. BIOINFORMATICS
- Mass spectrometry in high-throughput proteomics: ready for the big time
- (2010) Tommy Nilsson et al. NATURE METHODS
- NN-align. An artificial neural network-based alignment algorithm for MHC class II peptide binding prediction
- (2009) Morten Nielsen et al. BMC BIOINFORMATICS
Add your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload NowBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started