Virus-like insertions with sequence signatures similar to those of endogenous nonretroviral RNA viruses in the human genome

Protein Structure-Guided Hidden Markov Models (HMMs) as A Powerful Method in the Detection of Ancestral Endogenous Viral Elements

(2019) Heleri Kirsip et al.   Viruses-Basel

Expanding the RNA Virosphere by Unbiased Metagenomics

(2019) Yong-Zhen Zhang et al.   Annual Review of Virology

The role of ZAP and OAS3/RNAseL pathways in the attenuation of an RNA virus with elevated frequencies of CpG and UpA dinucleotides

(2019) Valerie Odon et al.   NUCLEIC ACIDS RESEARCH

MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms

(2018) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Systematic survey of non-retroviral virus-like elements in eukaryotic genomes

(2018) Kirill Kryukov et al.   VIRUS RESEARCH

Divergent bornaviruses from Australian carpet pythons with neurological disease date the origin of extant Bornaviridae prior to the end-Cretaceous extinction

(2018) Timothy H. Hyndman et al.   PLoS Pathogens

Conservation of Structure and Immune Antagonist Functions of Filoviral VP35 Homologs Present in Microbat Genomes

(2018) Megan R. Edwards et al.   Cell Reports

Dinucleotide Composition in Animal RNA Viruses Is Shaped More by Virus Family than by Host Species

(2017) Francesca Di Giallonardo et al.   JOURNAL OF VIROLOGY

CG dinucleotide suppression enables antiviral defence targeting non-self RNA

(2017) Matthew A. Takata et al.   NATURE

VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data

(2017) Jie Ren et al.   Microbiome

Putative endogenous filovirus VP35-like protein potentially functions as an IFN antagonist but not a polymerase cofactor

(2017) Tatsunari Kondoh et al.   PLoS One

Exaptation of Bornavirus-Like Nucleoprotein Elements in Afrotherians

(2016) Yuki Kobayashi et al.   PLoS Pathogens

piRNAs derived from ancient viral processed pseudogenes as transgenerational sequence-specific immune memory in mammals

(2015) Nicholas F. Parrish et al.   RNA

Transcription Profiling Demonstrates Epigenetic Control of Non-retroviral RNA Virus-Derived Elements in the Human Genome

(2015) Kozue Sofuku et al.   Cell Reports

Quantitative theory of entropic forces acting on constrained nucleotide sequences applied to viruses

(2014) Benjamin D. Greenbaum et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Inhibition of Borna disease virus replication by an endogenous bornavirus-like element in the ground squirrel genome

(2014) K. Fujino et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Comprehensive analysis of endogenous bornavirus-like elements in eukaryote genomes

(2013) M. Horie et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Codon Usage Determines the Mutational Robustness, Evolutionary Capacity, and Virulence of an RNA Virus

(2012) Adam S. Lauring et al.   Cell Host & Microbe

Endogenous viruses: insights into viral evolution and impact on host biology

(2012) Cédric Feschotte et al.   NATURE REVIEWS GENETICS

Multiobjective evolutionary algorithms to identify highly autocorrelated areas: the case of spatial distribution in financially compromised farms

(2011) Carlos R. García-Alonso et al.   ANNALS OF OPERATIONS RESEARCH

Filoviruses are ancient and integrated into mammalian genomes

(2011) Derek J Taylor et al.   BMC EVOLUTIONARY BIOLOGY

Repetitive Elements May Comprise Over Two-Thirds of the Human Genome

(2011) A. P. Jason de Koning et al.   PLoS Genetics

Endogenous non-retroviral RNA virus elements in mammalian genomes

(2010) Masayuki Horie et al.   NATURE

Endogenous Viral Elements in Animal Genomes

(2010) Aris Katzourakis et al.   PLoS Genetics

Unexpected Inheritance: Multiple Integrations of Ancient Bornavirus and Ebolavirus/Marburgvirus Sequences in Vertebrate Genomes

(2010) Vladimir A. Belyi et al.   PLoS Pathogens

Viroid Replication: Rolling-Circles, Enzymes and Ribozymes

(2009) Ricardo Flores et al.   Viruses-Basel