An unbiased template of the Drosophila brain and ventral nerve cord

A neurodevelopmental origin of behavioral individuality in the Drosophila visual system

(2020) Gerit Arne Linneweber et al.   SCIENCE

The natverse, a versatile toolbox for combining and analysing neuroanatomical data

(2020) Alexander Shakeel Bates et al.   eLife

State-dependent decoupling of sensory and motor circuits underlies behavioral flexibility in Drosophila

(2019) Jan M. Ache et al.   NATURE NEUROSCIENCE

Of what use is connectomics? A personal perspective on theDrosophilaconnectome

(2018) Ian A. Meinertzhagen   JOURNAL OF EXPERIMENTAL BIOLOGY

A Statistically Representative Atlas for Mapping Neuronal Circuits in the Drosophila Adult Brain

(2018) Ignacio Arganda-Carreras et al.   Frontiers in Neuroinformatics

Learning from connectomics on the fly

(2017) Philipp Schlegel et al.   Current Opinion in Insect Science

Automatic Segmentation of Drosophila Neural Compartments Using GAL4 Expression Data Reveals Novel Visual Pathways

(2016) Karin Panser et al.   CURRENT BIOLOGY

NBLAST: Rapid, Sensitive Comparison of Neuronal Structure and Construction of Neuron Family Databases

(2016) Marta Costa et al.   NEURON

Lineage mapping identifies molecular and architectural similarities between the larval and adult Drosophila central nervous system

(2016) Haluk Lacin et al.   eLife

Multi-atlas segmentation of biomedical images: A survey

(2015) Juan Eugenio Iglesias et al.   MEDICAL IMAGE ANALYSIS

A direction-selective local-thresholding method, DSLT, in combination with a dye-based method for automated three-dimensional segmentation of cells and airspaces in developing leaves

(2015) Takashi Kawase et al.   PLANT JOURNAL

Optimized tools for multicolor stochastic labeling reveal diverse stereotyped cell arrangements in the fly visual system

(2015) Aljoscha Nern et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Systematic Nomenclature for the Insect Brain

(2014) Kei Ito et al.   NEURON

Ultrafast tissue staining with chemical tags

(2014) J. Kohl et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The neuronal architecture of the mushroom body provides a logic for associative learning

(2014) Yoshinori Aso et al.   eLife

Clonal Development and Organization of the Adult Drosophila Central Brain

(2013) Hung-Hsiang Yu et al.   CURRENT BIOLOGY

Deformable Medical Image Registration: A Survey

(2013) A. Sotiras et al.   IEEE TRANSACTIONS ON MEDICAL IMAGING

ImgLib2—generic image processing in Java

(2012) Tobias Pietzsch et al.   BIOINFORMATICS

Fiji: an open-source platform for biological-image analysis

(2012) Johannes Schindelin et al.   NATURE METHODS

TrakEM2 Software for Neural Circuit Reconstruction

(2012) Albert Cardona et al.   PLoS One

A GAL4-Driver Line Resource for Drosophila Neurobiology

(2012) Arnim Jenett et al.   Cell Reports

A review of atlas-based segmentation for magnetic resonance brain images

(2011) Mariano Cabezas et al.   COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE

BrainAligner: 3D registration atlases of Drosophila brains

(2011) Hanchuan Peng et al.   NATURE METHODS

Sexual Dimorphism in the Fly Brain

(2010) Sebastian Cachero et al.   CURRENT BIOLOGY

Three-Dimensional Reconstruction of Brain-wide Wiring Networks in Drosophila at Single-Cell Resolution

(2010) Ann-Shyn Chiang et al.   CURRENT BIOLOGY

Refinement of Tools for Targeted Gene Expression in Drosophila

(2010) B. D. Pfeiffer et al.   GENETICS

Fully automatic stitching and distortion correction of transmission electron microscope images

(2010) Verena Kaynig et al.   JOURNAL OF STRUCTURAL BIOLOGY

A reproducible evaluation of ANTs similarity metric performance in brain image registration

(2010) Brian B. Avants et al.   NEUROIMAGE

Globally optimal stitching of tiled 3D microscopic image acquisitions

(2009) S. Preibisch et al.   BIOINFORMATICS

elastix: A Toolbox for Intensity-Based Medical Image Registration

(2009) S. Klein et al.   IEEE TRANSACTIONS ON MEDICAL IMAGING

A 3D digital atlas of C. elegans and its application to single-cell analyses

(2009) Fuhui Long et al.   NATURE METHODS

The optimal template effect in hippocampus studies of diseased populations

(2009) Brian B. Avants et al.   NEUROIMAGE

Symmetric diffeomorphic image registration with cross-correlation: Evaluating automated labeling of elderly and neurodegenerative brain

(2007) B AVANTS et al.   MEDICAL IMAGE ANALYSIS