Identification of ceRNA and candidate genes related to fertility conversion of TCMS line YS3038 in wheat

The Wheat 660K SNP array demonstrates great potential for marker‐assisted selection in polyploid wheat

(2020) Congwei Sun et al.   PLANT BIOTECHNOLOGY JOURNAL

The transcription factor OsbHLH138 regulates thermosensitive genic male sterility in rice via activation of TMS5

(2019) Jianyu Wen et al.   THEORETICAL AND APPLIED GENETICS

Energy metabolism involved in fertility of the wheat TCMS line YS3038

(2019) Yucui Han et al.   PLANTA

Re-analysis of long non-coding RNAs and prediction of circRNAs reveal their novel roles in susceptible tomato following TYLCV infection

(2018) Jinyan Wang et al.   BMC PLANT BIOLOGY

CircPrimer: a software for annotating circRNAs and determining the specificity of circRNA primers

(2018) Shanliang Zhong et al.   BMC BIOINFORMATICS

Identification and Functional Characterization of Tomato CircRNAs Derived from Genes Involved in Fruit Pigment Accumulation

(2017) Jinjuan Tan et al.   Scientific Reports

Diverse alternative back-splicing and alternative splicing landscape of circular RNAs

(2016) Xiao-Ou Zhang et al.   GENOME RESEARCH

Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown

(2016) Mihaela Pertea et al.   Nature Protocols

Comprehensive identification of internal structure and alternative splicing events in circular RNAs

(2016) Yuan Gao et al.   Nature Communications

Programmed cell death, antioxidant response and oxidative stress in wheat flag leaves induced by chemical hybridization agent SQ-1

(2016) Shu-ping WANG et al.   Journal of Integrative Agriculture

Identification and expression profiles of sRNAs and their biogenesis and action-related genes in male and female cones of Pinus tabuliformis

(2015) Shi-Hui Niu et al.   BMC GENOMICS

Genome-wide characterization of developmental stage- and tissue-specific transcription factors in wheat

(2015) Zhen-Yong Chen et al.   BMC GENOMICS

Comparative transcriptome analysis reveals carbohydrate and lipid metabolism blocks in Brassica napus L. male sterility induced by the chemical hybridization agent monosulfuron ester sodium

(2015) Zhanjie Li et al.   BMC GENOMICS

Comparative Analysis of Anther Transcriptome Profiles of Two Different Rice Male Sterile Lines Genotypes under Cold Stress

(2015) Bin Bai et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

The alteration in the architecture of a T-DNA insertion rice mutantosmtd1is caused by up-regulation ofMicroRNA156f

(2015) Qing Liu et al.   Journal of Integrative Plant Biology

StringTie enables improved reconstruction of a transcriptome from RNA-seq reads

(2015) Mihaela Pertea et al.   NATURE BIOTECHNOLOGY

Deficiency of theArabidopsisHelicase RTEL1 Triggers a SOG1-Dependent Replication Checkpoint in Response to DNA Cross-Links

(2015) Zhubing Hu et al.   PLANT CELL

Transcriptome-wide investigation of circular RNAs in rice

(2015) Tingting Lu et al.   RNA

LncTar: a tool for predicting the RNA targets of long noncoding RNAs

(2014) Jianwei Li et al.   BRIEFINGS IN BIOINFORMATICS

Complementary Sequence-Mediated Exon Circularization

(2014) Xiao-Ou Zhang et al.   CELL

Basic helix–loop–helix transcription factor BcbHLHpol functions as a positive regulator of pollen development in non-heading Chinese cabbage

(2014) Tongkun Liu et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

circRNA Biogenesis Competes with Pre-mRNA Splicing

(2014) Reut Ashwal-Fluss et al.   MOLECULAR CELL

The multilayered complexity of ceRNA crosstalk and competition

(2014) Yvonne Tay et al.   NATURE

TheArabidopsis thalianaHomolog of the Helicase RTEL1 Plays Multiple Roles in Preserving Genome Stability

(2014) Julia Recker et al.   PLANT CELL

The Rice Basic Helix-Loop-Helix Transcription Factor TDR INTERACTING PROTEIN2 Is a Central Switch in Early Anther Development

(2014) Z. Fu et al.   PLANT CELL

ABORTED MICROSPORES Acts as a Master Regulator of Pollen Wall Formation in Arabidopsis

(2014) J. Xu et al.   PLANT CELL

Efficient backsplicing produces translatable circular mRNAs

(2014) Yang Wang et al.   RNA

RNase ZS1 processes Ub L40 mRNAs and controls thermosensitive genic male sterility in rice

(2014) Hai Zhou et al.   Nature Communications

Male Sterility and Fertility Restoration in Crops

(2013) Letian Chen et al.   Annual Review of Plant Biology

Natural RNA circles function as efficient microRNA sponges

(2013) Thomas B. Hansen et al.   NATURE

Circular RNAs are a large class of animal RNAs with regulatory potency

(2013) Sebastian Memczak et al.   NATURE

A Circuitous Route to Noncoding RNA

(2013) J. E. Wilusz et al.   SCIENCE

Photoperiod- and thermo-sensitive genic male sterility in rice are caused by a point mutation in a novel noncoding RNA that produces a small RNA

(2012) Hai Zhou et al.   CELL RESEARCH

RNA-Directed DNA Methylation Is Involved in Regulating Photoperiod-Sensitive Male Sterility in Rice

(2012) Jihua Ding et al.   Molecular Plant

A long noncoding RNA regulates photoperiod-sensitive male sterility, an essential component of hybrid rice

(2012) J. Ding et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Hybrid breeding in autogamous cereals

(2012) Carl Friedrich Horst Longin et al.   THEORETICAL AND APPLIED GENETICS

miRNA-dependent gene silencing involving Ago2-mediated cleavage of a circular antisense RNA

(2011) Thomas B Hansen et al.   EMBO JOURNAL

RNAi mediated silencing of a wall associated kinase, OsiWAK1 in Oryza sativa results in impaired root development and sterility due to anther indehiscence

(2011) Vydehi Kanneganti et al.   PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS

Metabolic Disorder, Inflammation, and Deregulated Molecular Pathways Converging in Pancreatic Cancer Development: Implications for New Therapeutic Strategies

(2011) Yoshiharu Motoo et al.   Cancers

Control of female gamete formation by a small RNA pathway in Arabidopsis

(2010) Vianey Olmedo-Monfil et al.   NATURE

miR156-Targeted and Nontargeted SBP-Box Transcription Factors Act in Concert to Secure Male Fertility inArabidopsis

(2010) Shuping Xing et al.   PLANT CELL

The Role of Receptor-Like Kinases in Regulating Cell Wall Function

(2010) B. J. Steinwand et al.   PLANT PHYSIOLOGY

Identification and characterization of a novel testis-specific gene CKT2 , which encodes a substrate for protein kinase CK2

(2009) Xiyuan Bai et al.   NUCLEIC ACIDS RESEARCH

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS

Characterization of an Alternative Splice Variant of LKB1

(2008) Fiona C. Denison et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Cell-PLoc: a package of Web servers for predicting subcellular localization of proteins in various organisms

(2008) Kuo-Chen Chou et al.   Nature Protocols