Quantitative proteomic analysis to capture the role of heat‐accumulated proteins in moss plant acquired thermotolerance

Comparative analysis of thylakoid protein complexes in state transition mutants nsi and stn7: focus on PSI and LHCII

(2020) Minna M. Koskela et al.   PHOTOSYNTHESIS RESEARCH

Transcriptome profiling of abiotic responses to heat, cold, salt, and osmotic stress of Capsicum annuum L.

(2020) Won-Hee Kang et al.   Scientific Data

Plant small heat shock proteins – evolutionary and functional diversity

(2020) Elizabeth R. Waters et al.   NEW PHYTOLOGIST

The Moss Physcomitrium (Physcomitrella) patens: A Model Organism for Non-Seed Plants

(2020) Stefan A. Rensing et al.   PLANT CELL

Transcriptome analysis of heat stress and drought stress in pearl millet based on Pacbio full-length transcriptome sequencing

(2020) Min Sun et al.   BMC PLANT BIOLOGY

Abiotic and biotic stresses induce a core transcriptome response in rice

(2019) Stephen P. Cohen et al.   Scientific Reports

Cyclic nucleotide-gated ion channel 6 mediates thermotolerance in Arabidopsis seedlings by regulating nitric oxide production via cytosolic calcium ions

(2019) Xuan Peng et al.   BMC PLANT BIOLOGY

Effects of L-proline on swimming parameters of Daphnia magna subjected to heat stress

(2019) Adam Bownik et al.   JOURNAL OF THERMAL BIOLOGY

Chaperones convert the energy from ATP into the nonequilibrium stabilization of native proteins

(2018) Pierre Goloubinoff et al.   Nature Chemical Biology

The Physcomitrella patens chromosome-scale assembly reveals moss genome structure and evolution

(2018) Daniel Lang et al.   PLANT JOURNAL

Plant Abiotic Stress Proteomics: The Major Factors Determining Alterations in Cellular Proteome

(2018) Klára Kosová et al.   Frontiers in Plant Science

A comparison of heat-stress transcriptome changes between wild-type Arabidopsis pollen and a heat-sensitive mutant harboring a knockout of cyclic nucleotide-gated cation channel 16 (cngc16)

(2018) Maryam Rahmati Ishka et al.   BMC GENOMICS

Transcriptional Regulation of the Ambient Temperature Response by H2A.Z Nucleosomes and HSF1 Transcription Factors in Arabidopsis

(2017) Sandra Cortijo et al.   Molecular Plant

Identification of core subunits of photosystem II as action sites of HSP21, which is activated by the GUN5-mediated retrograde pathway in Arabidopsis

(2017) Si-Ting Chen et al.   PLANT JOURNAL

The chloroplast-localized small heat shock protein Hsp21 associates with the thylakoid membranes in heat-stressed plants

(2017) Katja Bernfur et al.   PROTEIN SCIENCE

Interactions between 2-Cys peroxiredoxins and ascorbate in autophagosome formation during the heat stress response inSolanum lycopersicum

(2016) Fei Cheng et al.   JOURNAL OF EXPERIMENTAL BOTANY

Simultaneous regulation of antenna size and photosystem I/II stoichiometry in Arabidopsis thaliana

(2016) Ting Jia et al.   PLANTA

The Plant Heat Stress Transcription Factors (HSFs): Structure, Regulation, and Function in Response to Abiotic Stresses

(2016) Meng Guo et al.   Frontiers in Plant Science

Diversity, distribution and roles of osmoprotective compounds accumulated in halophytes under abiotic stress

(2015) Inès Slama et al.   ANNALS OF BOTANY

Identification of peptides in human Hsp20 and Hsp27 that possess molecular chaperone and anti-apoptotic activities

(2015) Rooban B. Nahomi et al.   BIOCHEMICAL JOURNAL

Temporal transcriptome profiling reveals expression partitioning of homeologous genes contributing to heat and drought acclimation in wheat (Triticum aestivum L.)

(2015) Zhenshan Liu et al.   BMC PLANT BIOLOGY

Quantitative proteomics of heat-treated human cells show an across-the-board mild depletion of housekeeping proteins to massively accumulate few HSPs

(2015) Andrija Finka et al.   CELL STRESS & CHAPERONES

Involvement of small heat shock proteins, trehalose, and lipids in the thermal stress management in Schizosaccharomyces pombe

(2015) Attila Glatz et al.   CELL STRESS & CHAPERONES

A First Line of Stress Defense: Small Heat Shock Proteins and Their Function in Protein Homeostasis

(2015) Martin Haslbeck et al.   JOURNAL OF MOLECULAR BIOLOGY

Molecular chaperones are nanomachines that catalytically unfold misfolded and alternatively folded proteins

(2014) Rayees U. H. Mattoo et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Photosynthesis: Response to high temperature stress

(2014) Sonal Mathur et al.   JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY B-BIOLOGY

Accurate Proteome-wide Label-free Quantification by Delayed Normalization and Maximal Peptide Ratio Extraction, Termed MaxLFQ

(2014) Jürgen Cox et al.   MOLECULAR & CELLULAR PROTEOMICS

LocTree3 prediction of localization

(2014) Tatyana Goldberg et al.   NUCLEIC ACIDS RESEARCH

Perspectives on deciphering mechanisms underlying plant heat stress response and thermotolerance

(2014) Kamila Bokszczanin   Frontiers in Plant Science

The CNGCb and CNGCd genes from Physcomitrella patens moss encode for thermosensory calcium channels responding to fluidity changes in the plasma membrane

(2013) Andrija Finka et al.   CELL STRESS & CHAPERONES

Proteomic data from human cell cultures refine mechanisms of chaperone-mediated protein homeostasis

(2013) Andrija Finka et al.   CELL STRESS & CHAPERONES

Physiological, Biochemical, and Molecular Mechanisms of Heat Stress Tolerance in Plants

(2013) Mirza Hasanuzzaman et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Promoter- and RNA polymerase II–dependenthsp-16gene association with nuclear pores inCaenorhabditis elegans

(2013) Sabine Rohner et al.   JOURNAL OF CELL BIOLOGY

Widespread Regulation of Translation by Elongation Pausing in Heat Shock

(2013) Reut Shalgi et al.   MOLECULAR CELL

Overexpression of Small Heat Shock Protein LimHSP16.45 in Arabidopsis Enhances Tolerance to Abiotic Stresses

(2013) Changjun Mu et al.   PLoS One

Unexpected Effects of Macromolecular Crowding on Protein Stability

(2012) Laura A. Benton et al.   BIOCHEMISTRY

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

Effects of abiotic stress on plants: a systems biology perspective

(2012) Grant R Cramer et al.   BMC PLANT BIOLOGY

Quantitative analysis of organelle distribution and dynamics in Physcomitrella patens protonemal cells

(2012) Fabienne Furt et al.   BMC PLANT BIOLOGY

Plant responses to stresses: role of ascorbate peroxidase in the antioxidant protection

(2012) Andréia Caverzan et al.   GENETICS AND MOLECULAR BIOLOGY

Mutations in an Arabidopsis Mitochondrial Transcription Termination Factor-Related Protein Enhance Thermotolerance in the Absence of the Major Molecular Chaperone HSP101

(2012) M. Kim et al.   PLANT CELL

Plasma Membrane Cyclic Nucleotide Gated Calcium Channels Control Land Plant Thermal Sensing and Acquired Thermotolerance

(2012) A. Finka et al.   PLANT CELL

A heat-activated calcium-permeable channel - Arabidopsis cyclic nucleotide-gated ion channel 6 - is involved in heat shock responses

(2012) Fei Gao et al.   PLANT JOURNAL

A Cyclic Nucleotide-Gated Channel (CNGC16) in Pollen Is Critical for Stress Tolerance in Pollen Reproductive Development

(2012) M. Tunc-Ozdemir et al.   PLANT PHYSIOLOGY

Heat shock response in photosynthetic organisms: Membrane and lipid connections

(2012) Ibolya Horváth et al.   PROGRESS IN LIPID RESEARCH

Dynamic protein composition of Arabidopsis thaliana cytosolic ribosomes in response to sucrose feeding as revealed by label free MSE proteomics

(2012) Maureen Hummel et al.   PROTEOMICS

How do plants feel the heat?

(2012) Ron Mittler et al.   TRENDS IN BIOCHEMICAL SCIENCES

Downregulation of Chloroplast RPS1 Negatively Modulates Nuclear Heat-Responsive Expression of HsfA2 and Its Target Genes in Arabidopsis

(2012) Hai-Dong Yu et al.   PLoS Genetics

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Global quantification of mammalian gene expression control

(2011) Björn Schwanhäusser et al.   NATURE

Overexpression of the trehalose-6-phosphate synthase gene OsTPS1 enhances abiotic stress tolerance in rice

(2011) Hao-Wen Li et al.   PLANTA

Heat induces the splicing by IRE1 of a mRNA encoding a transcription factor involved in the unfolded protein response in Arabidopsis

(2011) Y. Deng et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Probing the different chaperone activities of the bacterial HSP70-HSP40 system using a thermolabile luciferase substrate

(2011) Sandeep K. Sharma et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Climate Trends and Global Crop Production Since 1980

(2011) D. B. Lobell et al.   SCIENCE

Apoptotic-like regulation of programmed cell death in plants

(2010) Theresa J. Reape et al.   APOPTOSIS

Meta-analysis of heat- and chemically upregulated chaperone genes in plant and human cells

(2010) Andrija Finka et al.   CELL STRESS & CHAPERONES

Exploring the soluble proteome of TBY-2 cells at the switch towards different cell fates in response to heat shocks

(2010) MILENA MARSONI et al.   PLANT CELL AND ENVIRONMENT

Differential contributions of ribosomal protein genes to Arabidopsis thaliana leaf development

(2010) Gorou Horiguchi et al.   PLANT JOURNAL

Signaling from the Endoplasmic Reticulum Activates Brassinosteroid Signaling and Promotes Acclimation to Stress in Arabidopsis

(2010) P. Che et al.   Science Signaling

Origin and Evolution of the Ribosome

(2010) G. E. Fox   Cold Spring Harbor Perspectives in Biology

Estimating accuracy of RNA-Seq and microarrays with proteomics

(2009) Xing Fu et al.   BMC GENOMICS

H2A.Z-Containing Nucleosomes Mediate the Thermosensory Response in Arabidopsis

(2009) S. Vinod Kumar et al.   CELL

Specific Interaction between Tomato HsfA1 and HsfA2 Creates Hetero-oligomeric Superactivator Complexes for Synergistic Activation of Heat Stress Gene Expression

(2009) Kwan Yu Chan-Schaminet et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The Cytosolic Protein Response as a Subcomponent of the Wider Heat Shock Response in Arabidopsis

(2009) A. Sugio et al.   PLANT CELL

The Heat Shock Response in Moss Plants Is Regulated by Specific Calcium-Permeable Channels in the Plasma Membrane

(2009) Y. Saidi et al.   PLANT CELL

Temperature-induced lipocalin is required for basal and acquired thermotolerance inArabidopsis

(2009) WEN-TZU CHI et al.   PLANT CELL AND ENVIRONMENT

Macromolecular Crowding and Confinement: Biochemical, Biophysical, and Potential Physiological Consequences

(2008) Huan-Xiang Zhou et al.   Annual Review of Biophysics

Chaperones in control of protein disaggregation

(2008) Krzysztof Liberek et al.   EMBO JOURNAL

Photosynthetic acclimation: State transitions and adjustment of photosystem stoichiometry - functional relationships between short-term and long-term light quality acclimation in plants

(2008) Lars Dietzel et al.   FEBS Journal

Programmed cell death in plants: distinguishing between different modes

(2008) Theresa J. Reape et al.   JOURNAL OF EXPERIMENTAL BOTANY

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

(2008) Jürgen Cox et al.   NATURE BIOTECHNOLOGY

An approach to handling and interpretation of ambiguous data in transcriptome and proteome comparisons

(2008) Martin Irmler et al.   PROTEOMICS