Large‐scale survey and database of high affinity ligands for peptide recognition modules

IUPred2A: context-dependent prediction of protein disorder as a function of redox state and protein binding

(2018) Bálint Mészáros et al.   NUCLEIC ACIDS RESEARCH

Proteome‐wide analysis of phospho‐regulated PDZ domain interactions

(2018) Gustav N Sundell et al.   Molecular Systems Biology

Comprehensive Analysis of the Human SH3 Domain Family Reveals a Wide Variety of Non-canonical Specificities

(2017) Joan Teyra et al.   STRUCTURE

Exhaustive search of linear information encoding protein-peptide recognition

(2017) Abdellali Kelil et al.   PLoS Computational Biology

Predicting physiologically relevant SH3 domain mediated protein–protein interactions in yeast

(2016) Shobhit Jain et al.   BIOINFORMATICS

Magnetite Biomineralization inMagnetospirillum magneticumIs Regulated by a Switch-like Behavior in the HtrA Protease MamE

(2016) David M. Hershey et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

InterPro in 2017—beyond protein family and domain annotations

(2016) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

The BioGRID interaction database: 2017 update

(2016) Andrew Chatr-aryamontri et al.   NUCLEIC ACIDS RESEARCH

Evolution of domain–peptide interactions to coadapt specificity and affinity to functional diversity

(2016) Abdellali Kelil et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Experimental detection of short regulatory motifs in eukaryotic proteins: tips for good practice as well as for bad

(2015) Toby J. Gibson et al.   Cell Communication and Signaling

Synthetic antibodies and peptides recognizing progressive multifocal leukoencephalopathy-specific point mutations in polyomavirus JC capsid viral protein 1

(2015) Gang Chen et al.   mAbs

The Pfam protein families database: towards a more sustainable future

(2015) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

A Million Peptide Motifs for the Molecular Biologist

(2014) Peter Tompa et al.   MOLECULAR CELL

SH3 interactome conserves general function over specific form

(2013) X. Xin et al.   Molecular Systems Biology

The eukaryotic linear motif resource ELM: 10 years and counting

(2013) Holger Dinkel et al.   NUCLEIC ACIDS RESEARCH

3did: a catalog of domain-based interactions of known three-dimensional structure

(2013) Roberto Mosca et al.   NUCLEIC ACIDS RESEARCH

Domain-mediated protein interaction prediction: From genome to network

(2012) Jüri Reimand et al.   FEBS LETTERS

Elucidation of the binding preferences of peptide recognition modules: SH3 and PDZ domains

(2012) Joan Teyra et al.   FEBS LETTERS

Update on activities at the Universal Protein Resource (UniProt) in 2013

(2012)   NUCLEIC ACIDS RESEARCH

High-throughput analysis of peptide-binding modules

(2012) Bernard A. Liu et al.   PROTEOMICS

Phage display can select over-hydrophobic sequences that may impair prediction of natural domain–peptide interactions

(2011) Katja Luck et al.   BIOINFORMATICS

The protein interaction network mediated by human SH3 domains

(2011) Martina Carducci et al.   BIOTECHNOLOGY ADVANCES

SCOWLP update: 3D classification of protein-protein, -peptide, -saccharide and -nucleic acid interactions, and structure-based binding inferences across folds

(2011) Joan Teyra et al.   BMC BIOINFORMATICS

A Conserved Residue in the Yeast Bem1p SH3 Domain Maintains the High Level of Binding Specificity Required for Function

(2011) Maryna Gorelik et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Attributes of short linear motifs

(2011) Norman E. Davey et al.   Molecular BioSystems

The Pfam protein families database

(2011) M. Punta et al.   NUCLEIC ACIDS RESEARCH

SH2 Domains Recognize Contextual Peptide Sequence Information to Determine Selectivity

(2010) Bernard A. Liu et al.   MOLECULAR & CELLULAR PROTEOMICS

Novel Peptide-Mediated Interactions Derived from High-Resolution 3-Dimensional Structures

(2010) Amelie Stein et al.   PLoS Computational Biology

A Peptide Antagonist of the TLR4-MD2 Interaction

(2009) Peter F. Slivka et al.   CHEMBIOCHEM

Inhibition of Wnt signaling by Dishevelled PDZ peptides

(2009) Yingnan Zhang et al.   Nature Chemical Biology

Bayesian Modeling of the Yeast SH3 Domain Interactome Predicts Spatiotemporal Dynamics of Endocytosis Proteins

(2009) Raffi Tonikian et al.   PLOS BIOLOGY

A Specificity Map for the PDZ Domain Family

(2008) Raffi Tonikian et al.   PLOS BIOLOGY