Top‐down controls on nutrient cycling and population dynamics in a model estuarine photoautotroph–heterotroph co‐culture system

Microbial transformation of virus-induced dissolved organic matter from picocyanobacteria: coupling of bacterial diversity and DOM chemodiversity

(2019) Zhao Zhao et al.   ISME Journal

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

(2019) Evan Bolyen et al.   NATURE BIOTECHNOLOGY

Heterotrophic Bacteria Enhance the Aggregation of the Marine Picocyanobacteria Prochlorococcus and Synechococcus

(2019) Bianca N. Cruz et al.   Frontiers in Microbiology

Biphasic cellular adaptations and ecological implications of Alteromonas macleodii degrading a mixture of algal polysaccharides

(2018) Hanna Koch et al.   ISME Journal

Temperature regulation of marine heterotrophic prokaryotes increases latitudinally as a breach between bottom-up and top-down controls

(2017) Xosé Anxelu G. Morán et al.   GLOBAL CHANGE BIOLOGY

Muricauda lutea sp. nov., isolated from seawater

(2017) Yanan Wang et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Nutrient recycling facilitates long-term stability of marine microbial phototroph–heterotroph interactions

(2017) Joseph A. Christie-Oleza et al.   Nature Microbiology

Microorganisms and ocean global change

(2017) David A. Hutchins et al.   Nature Microbiology

Deblur Rapidly Resolves Single-Nucleotide Community Sequence Patterns

(2017) Amnon Amir et al.   mSystems

Viruses Inhibit CO 2 Fixation in the Most Abundant Phototrophs on Earth

(2016) Richard J. Puxty et al.   CURRENT BIOLOGY

Protist-Bacteria Associations: Gammaproteobacteria and Alphaproteobacteria Are Prevalent as Digestion-Resistant Bacteria in Ciliated Protozoa

(2016) Jun Gong et al.   Frontiers in Microbiology

Phaeodactylibacter luteus sp. nov., isolated from the oleaginous microalga Picochlorum sp.

(2015) Xueqian Lei et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Ingestion of the unicellular cyanobacterium Synechococcus by the mixotrophic red tide ciliate Mesodinium rubrum

(2015) Yeong Du Yoo et al.   ALGAE

Phaeodactylibacter xiamenensis gen. nov., sp. nov., a member of the family Saprospiraceae isolated from the marine alga Phaeodactylum tricornutum

(2014) Z. Chen et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Inference of interactions in cyanobacterial–heterotrophic co-cultures via transcriptome sequencing

(2014) Alexander S Beliaev et al.   ISME Journal

Prochlorococcus: the structure and function of collective diversity

(2014) Steven J. Biller et al.   NATURE REVIEWS MICROBIOLOGY

Accumulation and enhanced cycling of polyphosphate by Sargasso Sea plankton in response to low phosphorus

(2014) P. Martin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Determination of nanomolar levels of nutrients in seawater

(2014) Jian Ma et al.   TRAC-TRENDS IN ANALYTICAL CHEMISTRY

Phototrophic biofilm assembly in microbial-mat-derived unicyanobacterial consortia: model systems for the study of autotroph-heterotroph interactions

(2014) Jessica K. Cole et al.   Frontiers in Microbiology

Top-down controls on bacterial community structure: microbial network analysis of bacteria, T4-like viruses and protists

(2013) Cheryl-Emiliane T Chow et al.   ISME Journal

Responses of the coastal bacterial community to viral infection of the algae Phaeocystis globosa

(2013) Abdul R Sheik et al.   ISME Journal

Modelling spatial and temporal patterns in size-structured marine plankton communities: top–down and bottom–up controls

(2013) Ben A. Ward et al.   JOURNAL OF PLANKTON RESEARCH

Present and future global distributions of the marine Cyanobacteria Prochlorococcus and Synechococcus

(2013) P. Flombaum et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing

(2012) Nicholas A Bokulich et al.   NATURE METHODS

Act together—implications of symbioses in aquatic ciliates

(2012) Claudia Dziallas et al.   Frontiers in Microbiology

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Effect of grazers and viruses on bacterial community structure and production in two contrasting trophic lakes

(2011) Lyria Berdjeb et al.   BMC MICROBIOLOGY

Ecological and evolutive implications of bacterial defences against predators

(2011) Alexandre Jousset   ENVIRONMENTAL MICROBIOLOGY

The relative importance of sloppy feeding, excretion, and fecal pellet leaching in the release of dissolved carbon and nitrogen by Acartia tonsa copepods

(2011) Grace K. Saba et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

Complete genome sequence of Haliscomenobacter hydrossis type strain (OT)

(2011) Hajnalka Daligault et al.   Standards in Genomic Sciences

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Detection of a Novel Subspecies of Francisella noatunensis as Endosymbiont of the Ciliate Euplotes raikovi

(2010) Martina Schrallhammer et al.   MICROBIAL ECOLOGY

Microbial production of recalcitrant dissolved organic matter: long-term carbon storage in the global ocean

(2010) Nianzhi Jiao et al.   NATURE REVIEWS MICROBIOLOGY

Dynamics of cyanobacteria–ciliate grazer activity in bitrophic and tritrophic microcosms

(2009) J Fyda et al.   AQUATIC MICROBIAL ECOLOGY

Annual changes of bacterial mortality due to viruses and protists in an oligotrophic coastal environment (NW Mediterranean)

(2009) Julia A. Boras et al.   ENVIRONMENTAL MICROBIOLOGY

Muricauda lutaonensis sp. nov., a moderate thermophile isolated from a coastal hot spring

(2009) A. B. Arun et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Maritalea myrionectae gen. nov., sp. nov., isolated from a culture of the marine ciliate Myrionecta rubra

(2009) C. Y. Hwang et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Viral lysis of Phaeocystis pouchetii: Implications for algal population dynamics and heterotrophic C, N and P cycling

(2009) Jakob Haaber et al.   ISME Journal

Estimates of virus- vs. grazing induced mortality of picophytoplankton in the North Sea during summer

(2008) AC Baudoux et al.   AQUATIC MICROBIAL ECOLOGY

Use of stable isotope-labelled cells to identify active grazers of picocyanobacteria in ocean surface waters

(2008) Jorge Frias-Lopez et al.   ENVIRONMENTAL MICROBIOLOGY

Global-scale processes with a nanoscale drive: the role of marine viruses

(2008) Corina P D Brussaard et al.   ISME Journal

Marine Polyphosphate: A Key Player in Geologic Phosphorus Sequestration

(2008) J. Diaz et al.   SCIENCE