Designing of peptide aptamer targeting the receptor-binding domain of spike protein of SARS-CoV-2: an in silico study

Cryo-EM structure of the 2019-nCoV spike in the prefusion conformation

(2020) Daniel Wrapp et al.   SCIENCE

Analysis of therapeutic targets for SARS-CoV-2 and discovery of potential drugs by computational methods

(2020) Canrong Wu et al.   Acta Pharmaceutica Sinica B

Structural and Functional Basis of SARS-CoV-2 Entry by Using Human ACE2

(2020) Qihui Wang et al.   CELL

Structure, Function, and Antigenicity of the SARS-CoV-2 Spike Glycoprotein

(2020) Alexandra C. Walls et al.   CELL

SARS-CoV-2 Cell Entry Depends on ACE2 and TMPRSS2 and Is Blocked by a Clinically Proven Protease Inhibitor

(2020) Markus Hoffmann et al.   CELL

Gene of the month: the 2019-nCoV/SARS-CoV-2 novel coronavirus spike protein

(2020) Tahir S Pillay   JOURNAL OF CLINICAL PATHOLOGY

Structure of the SARS-CoV-2 spike receptor-binding domain bound to the ACE2 receptor

(2020) Jun Lan et al.   NATURE

Structural basis of receptor recognition by SARS-CoV-2

(2020) Jian Shang et al.   NATURE

Can nanotechnology help in the fight against COVID-19?

(2020) Gabriela Palestino et al.   Expert Review of Anti-Infective Therapy

AIPpred: Sequence-Based Prediction of Anti-inflammatory Peptides Using Random Forest

(2018) Balachandran Manavalan et al.   Frontiers in Pharmacology

Origin and evolution of pathogenic coronaviruses

(2018) Jie Cui et al.   NATURE REVIEWS MICROBIOLOGY

The GC Content as a Main Factor Shaping the Amino Acid Usage During Bacterial Evolution Process

(2018) Meng-Ze Du et al.   Frontiers in Microbiology

The ClusPro web server for protein–protein docking

(2017) Dima Kozakov et al.   Nature Protocols

A Web Server and Mobile App for Computing Hemolytic Potency of Peptides

(2016) Kumardeep Chaudhary et al.   Scientific Reports

Peptide Aptamers: Development and Applications

(2015) Sergey Reverdatto et al.   CURRENT TOPICS IN MEDICINAL CHEMISTRY

The MM/PBSA and MM/GBSA methods to estimate ligand-binding affinities

(2015) Samuel Genheden et al.   Expert Opinion on Drug Discovery

Aptamers as a novel tool for diagnostics and therapy

(2015) Onat Kadioglu et al.   INVESTIGATIONAL NEW DRUGS

The I-TASSER Suite: protein structure and function prediction

(2015) Jianyi Yang et al.   NATURE METHODS

I-TASSER server: new development for protein structure and function predictions

(2015) Jianyi Yang et al.   NUCLEIC ACIDS RESEARCH

Analysis of the Relationship between Genomic GC Content and Patterns of Base Usage, Codon Usage and Amino Acid Usage in Prokaryotes: Similar GC Content Adopts Similar Compositional Frequencies Regardless of the Phylogenetic Lineages

(2014) Hui-Qi Zhou et al.   PLoS One

Host cell entry of Middle East respiratory syndrome coronavirus after two-step, furin-mediated activation of the spike protein

(2014) Jean Kaoru Millet et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

GalaxyRefine: protein structure refinement driven by side-chain repacking

(2013) Lim Heo et al.   NUCLEIC ACIDS RESEARCH

Electrical detection of cancer biomarker using aptamers with nanogap break-junctions

(2012) Azhar Ilyas et al.   NANOTECHNOLOGY

Advances in human proteomics at high scale with the SOMAscan proteomics platform

(2011) Larry Gold et al.   New Biotechnology

Protein 8-class secondary structure prediction using conditional neural fields

(2011) Zhiyong Wang et al.   PROTEOMICS

Molecular diagnostic and drug delivery agents based on aptamer-nanomaterial conjugates

(2010) Jung Heon Lee et al.   ADVANCED DRUG DELIVERY REVIEWS

Relative Codon Adaptation Index, a Sensitive Measure of Codon Usage Bias

(2010) Soohyun Lee et al.   Evolutionary Bioinformatics

I-TASSER: a unified platform for automated protein structure and function prediction

(2010) Ambrish Roy et al.   Nature Protocols

The Chemical Biology of Aptamers

(2009) Günter Mayer   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Inhibition of Thrombin Activity with DNA-Aptamers

(2009) A. B. Dobrovolsky et al.   BULLETIN OF EXPERIMENTAL BIOLOGY AND MEDICINE

Disease-specific biomarker discovery by aptamers

(2009) Henning Ulrich et al.   CYTOMETRY PART A

Activation of the SARS coronavirus spike protein via sequential proteolytic cleavage at two distinct sites

(2009) S. Belouzard et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Anti-coagulant aptamers

(2007) Subash Chandra Bose Gopinath   THROMBOSIS RESEARCH