标题
A Selective Autophagy Pathway for Phase-Separated Endocytic Protein Deposits
作者
关键词
selective autophagy, Ede1, liquid-liquid phase separation, clathrin-mediated endocytosis, intrinsic autophagy receptor, Atg8, Atg11
出版物
MOLECULAR CELL
Volume 80, Issue 5, Pages 764-778.e7
出版商
Elsevier BV
发表日期
2020-11-17
DOI
10.1016/j.molcel.2020.10.030
参考文献
相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。- Liquidity Is a Critical Determinant for Selective Autophagy of Protein Condensates
- (2020) Akinori Yamasaki et al. MOLECULAR CELL
- Selective autophagy degrades nuclear pore complexes
- (2020) Chia-Wei Lee et al. NATURE CELL BIOLOGY
- Endoplasmic reticulum contact sites regulate the dynamics of membraneless organelles
- (2020) Jason E. Lee et al. SCIENCE
- Structural basis of p62/SQSTM1 helical filaments and their role in cellular cargo uptake
- (2020) Arjen J. Jakobi et al. Nature Communications
- Atg2 mediates direct lipid transfer between membranes for autophagosome formation
- (2019) Takuo Osawa et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- FIP200 Claw Domain Binding to p62 Promotes Autophagosome Formation at Ubiquitin Condensates
- (2019) Eleonora Turco et al. MOLECULAR CELL
- Considerations and Challenges in Studying Liquid-Liquid Phase Separation and Biomolecular Condensates
- (2019) Simon Alberti et al. CELL
- YeastSpotter: Accurate and parameter-free web segmentation for microscopy images of yeast cells
- (2019) Alex X Lu et al. BIOINFORMATICS
- ATG2 transports lipids to promote autophagosome biogenesis
- (2019) Diana P. Valverde et al. JOURNAL OF CELL BIOLOGY
- Selective Autophagy: ATG8 Family Proteins, LIR Motifs and Cargo Receptors
- (2019) Terje Johansen et al. JOURNAL OF MOLECULAR BIOLOGY
- Atg11 tethers Atg9 vesicles to initiate selective autophagy
- (2019) Nena Matscheko et al. PLOS BIOLOGY
- The autophagic membrane tether ATG2A transfers lipids between membranes
- (2019) Shintaro Maeda et al. eLife
- Macromolecular structure determination using X-rays, neutrons and electrons: recent developments in Phenix
- (2019) Dorothee Liebschner et al. Acta Crystallographica Section D-Structural Biology
- A Diversity of Selective Autophagy Receptors Determines the Specificity of the Autophagy Pathway
- (2019) Vladimir Kirkin et al. MOLECULAR CELL
- Plant AtEH/Pan1 proteins drive autophagosome formation at ER-PM contact sites with actin and endocytic machinery
- (2019) Pengwei Wang et al. Nature Communications
- Local Fatty Acid Channeling into Phospholipid Synthesis Drives Phagophore Expansion during Autophagy
- (2019) Maximilian Schütter et al. CELL
- Regulation of Clathrin-Mediated Endocytosis
- (2018) Marcel Mettlen et al. Annual Review of Biochemistry
- Relationship of Sequence and Phase Separation in Protein Low-Complexity Regions
- (2018) Erik W. Martin et al. BIOCHEMISTRY
- Polyubiquitin chain-induced p62 phase separation drives autophagic cargo segregation
- (2018) Daxiao Sun et al. CELL RESEARCH
- p62 filaments capture and present ubiquitinated cargos for autophagy
- (2018) Gabriele Zaffagnini et al. EMBO JOURNAL
- Cargo recognition and degradation by selective autophagy
- (2018) Damián Gatica et al. NATURE CELL BIOLOGY
- Potent and specific Atg8-targeting autophagy inhibitory peptides from giant ankyrins
- (2018) Jianchao Li et al. Nature Chemical Biology
- Mechanism and medical implications of mammalian autophagy
- (2018) Ivan Dikic et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- The PRIDE database and related tools and resources in 2019: improving support for quantification data
- (2018) Yasset Perez-Riverol et al. NUCLEIC ACIDS RESEARCH
- STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets
- (2018) Damian Szklarczyk et al. NUCLEIC ACIDS RESEARCH
- Optimized cryo-focused ion beam sample preparation aimed at in situ structural studies of membrane proteins
- (2017) Miroslava Schaffer et al. JOURNAL OF STRUCTURAL BIOLOGY
- Implementation of a cryo-electron tomography tilt-scheme optimized for high resolution subtomogram averaging
- (2017) Wim J.H. Hagen et al. JOURNAL OF STRUCTURAL BIOLOGY
- MotionCor2: anisotropic correction of beam-induced motion for improved cryo-electron microscopy
- (2017) Shawn Q Zheng et al. NATURE METHODS
- Biomolecular condensates: organizers of cellular biochemistry
- (2017) Salman F. Banani et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Switch-like Arp2/3 activation upon WASP and WIP recruitment to an apparent threshold level by multivalent linker proteins in vivo
- (2017) Yidi Sun et al. eLife
- Intrinsically disordered linkers determine the interplay between phase separation and gelation in multivalent proteins
- (2017) Tyler S Harmon et al. eLife
- Recent developments in the CCP-EM software suite
- (2017) Tom Burnley et al. Acta Crystallographica Section D-Structural Biology
- Site-Specific Cryo-focused Ion Beam Sample Preparation Guided by 3D Correlative Microscopy
- (2016) Jan Arnold et al. BIOPHYSICAL JOURNAL
- Clathrin-mediated endocytosis in budding yeast at a glance
- (2016) Rebecca Lu et al. JOURNAL OF CELL SCIENCE
- An overview of macroautophagy in yeast
- (2016) Xin Wen et al. JOURNAL OF MOLECULAR BIOLOGY
- Mechanisms of Selective Autophagy
- (2016) Gabriele Zaffagnini et al. JOURNAL OF MOLECULAR BIOLOGY
- Two Independent Pathways within Selective Autophagy Converge to Activate Atg1 Kinase at the Vacuole
- (2016) Raffaela Torggler et al. MOLECULAR CELL
- Translocon component Sec62 acts in endoplasmic reticulum turnover during stress recovery
- (2016) Fiorenza Fumagalli et al. NATURE CELL BIOLOGY
- The Perseus computational platform for comprehensive analysis of (prote)omics data
- (2016) Stefka Tyanova et al. NATURE METHODS
- Mechanistic insights into selective autophagy pathways: lessons from yeast
- (2016) Jean-Claude Farré et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Mechanisms of Autophagy
- (2015) Nobuo N. Noda et al. Annual Review of Biophysics
- Analysis of the native conformation of the LIR/AIM motif in the Atg8/LC3/GABARAP-binding proteins
- (2015) Hana Popelka et al. Autophagy
- LCR-eXXXplorer: a web platform to search, visualize and share data for low complexity regions in protein sequences
- (2015) Ioannis Kirmitzoglou et al. BIOINFORMATICS
- Actin and Endocytosis in Budding Yeast
- (2015) Bruce L. Goode et al. GENETICS
- CTFFIND4: Fast and accurate defocus estimation from electron micrographs
- (2015) Alexis Rohou et al. JOURNAL OF STRUCTURAL BIOLOGY
- A Pan1/End3/Sla1 complex links Arp2/3-mediated actin assembly to sites of clathrin-mediated endocytosis
- (2015) Yidi Sun et al. MOLECULAR BIOLOGY OF THE CELL
- Receptor-Bound Targets of Selective Autophagy Use a Scaffold Protein to Activate the Atg1 Kinase
- (2015) Roarke A. Kamber et al. MOLECULAR CELL
- Receptor-mediated selective autophagy degrades the endoplasmic reticulum and the nucleus
- (2015) Keisuke Mochida et al. NATURE
- Actin and Endocytosis in Budding Yeast
- (2015) Bruce L. Goode et al. GENETICS
- iLIR
- (2014) Ioanna Kalvari et al. Autophagy
- Autophagic Clearance of PolyQ Proteins Mediated by Ubiquitin-Atg8 Adaptors of the Conserved CUET Protein Family
- (2014) Kefeng Lu et al. CELL
- Accurate Proteome-wide Label-free Quantification by Delayed Normalization and Maximal Peptide Ratio Extraction, Termed MaxLFQ
- (2014) Jürgen Cox et al. MOLECULAR & CELLULAR PROTEOMICS
- Quantification of cytosolic interactions identifies Ede1 oligomers as key organizers of endocytosis
- (2014) D. Boeke et al. Molecular Systems Biology
- Endocytic Accessory Factors and Regulation of Clathrin-Mediated Endocytosis
- (2014) C. J. Merrifield et al. Cold Spring Harbor Perspectives in Biology
- Molecular Structure, Function, and Dynamics of Clathrin-Mediated Membrane Traffic
- (2014) T. Kirchhausen et al. Cold Spring Harbor Perspectives in Biology
- A current perspective of autophagosome biogenesis
- (2013) Shusaku T Shibutani et al. CELL RESEARCH
- Plasma Membrane Reshaping during Endocytosis Is Revealed by Time-Resolved Electron Tomography
- (2012) Wanda Kukulski et al. CELL
- RELION: Implementation of a Bayesian approach to cryo-EM structure determination
- (2012) Sjors H.W. Scheres JOURNAL OF STRUCTURAL BIOLOGY
- Autophagy modulates dynamics of connexins at the plasma membrane in a ubiquitin-dependent manner
- (2012) Eloy Bejarano et al. MOLECULAR BIOLOGY OF THE CELL
- Fiji: an open-source platform for biological-image analysis
- (2012) Johannes Schindelin et al. NATURE METHODS
- NIH Image to ImageJ: 25 years of image analysis
- (2012) Caroline A Schneider et al. NATURE METHODS
- The Role of Atg Proteins in Autophagosome Formation
- (2011) Noboru Mizushima et al. Annual Review of Cell and Developmental Biology
- PyTom: A python-based toolbox for localization of macromolecules in cryo-electron tomograms and subtomogram analysis
- (2011) Thomas Hrabe et al. JOURNAL OF STRUCTURAL BIOLOGY
- Analysis of yeast endocytic site formation and maturation through a regulatory transition point
- (2011) Susheela Y. Carroll et al. MOLECULAR BIOLOGY OF THE CELL
- Lessons from yeast for clathrin-mediated endocytosis
- (2011) Douglas R. Boettner et al. NATURE CELL BIOLOGY
- Clathrin-mediated endocytosis in budding yeast
- (2011) Jasper Weinberg et al. TRENDS IN CELL BIOLOGY
- Features and development ofCoot
- (2010) P. Emsley et al. ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY
- Atg8-family interacting motif crucial for selective autophagy
- (2010) Nobuo N. Noda et al. FEBS LETTERS
- Quantitative proteomics combined with BAC TransgeneOmics reveals in vivo protein interactions
- (2010) Nina C. Hubner et al. JOURNAL OF CELL BIOLOGY
- Micromachining tools and correlative approaches for cellular cryo-electron tomography
- (2010) Alexander Rigort et al. JOURNAL OF STRUCTURAL BIOLOGY
- Network organization of the human autophagy system
- (2010) Christian Behrends et al. NATURE
- Mutation at the cargo-receptor binding site of Atg8 also affects its general autophagy regulation function
- (2009) Kung-Hsien Ho et al. Autophagy
- Dynamics and diversity in autophagy mechanisms: lessons from yeast
- (2009) Hitoshi Nakatogawa et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- The Function of Yeast Epsin and Ede1 Ubiquitin-Binding Domains During Receptor Internalization
- (2009) Michael R. Dores et al. TRAFFIC
- CellProfiler Analyst: data exploration and analysis software for complex image-based screens
- (2008) Thouis R Jones et al. BMC BIOINFORMATICS
- MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification
- (2008) Jürgen Cox et al. NATURE BIOTECHNOLOGY
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