Whole-genome sequence, SNP chips and pedigree structure: building demographic profiles in domestic dog breeds to optimize genetic-trait mapping

Half of 23 Belgian dog breeds has a compromised genetic diversity, as revealed by genealogical and molecular data analysis

(2016) K. Wijnrocx et al.   JOURNAL OF ANIMAL BREEDING AND GENETICS

Complex disease and phenotype mapping in the domestic dog

(2016) Jessica J. Hayward et al.   Nature Communications

Human-directed social behaviour in dogs shows significant heritability

(2015) M. E. Persson et al.   GENES BRAIN AND BEHAVIOR

Comparison against 186 canid whole-genome sequences reveals survival strategies of an ancient clonally transmissible canine tumor

(2015) Brennan Decker et al.   GENOME RESEARCH

Genetic management of Dutch golden retriever dogs with a simulation tool

(2015) J.J. Windig et al.   JOURNAL OF ANIMAL BREEDING AND GENETICS

Evaluating the performance of selection scans to detect selective sweeps in domestic dogs

(2015) Florencia Schlamp et al.   MOLECULAR ECOLOGY

Bottlenecks and selective sweeps during domestication have increased deleterious genetic variation in dogs

(2015) Clare D. Marsden et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A pedigree-based genetic appraisal of Boxer ARVC and the role of the Striatin mutation

(2015) B. M. Cattanach et al.   VETERINARY RECORD

SNeP: a tool to estimate trends in recent effective population size trajectories using genome-wide SNP data

(2015) Mario Barbato et al.   Frontiers in Genetics

Insights into Morphology and Disease from the Dog Genome Project

(2014) Jeffrey J. Schoenebeck et al.   Annual Review of Cell and Developmental Biology

Whole-genome sequencing of six dog breeds from continuous altitudes reveals adaptation to high-altitude hypoxia

(2014) Xiao Gou et al.   GENOME RESEARCH

A Novel Form of Progressive Retinal Atrophy in Swedish Vallhund Dogs

(2014) Ann E. Cooper et al.   PLoS One

A LINE-1 Insertion in DLX6 Is Responsible for Cleft Palate and Mandibular Abnormalities in a Canine Model of Pierre Robin Sequence

(2014) Zena T. Wolf et al.   PLoS Genetics

Genome Sequencing Highlights the Dynamic Early History of Dogs

(2014) Adam H. Freedman et al.   PLoS Genetics

The genomic signature of dog domestication reveals adaptation to a starch-rich diet

(2013) Erik Axelsson et al.   NATURE

Estimated Breeding Values for Canine Hip Dysplasia Radiographic Traits in a Cohort of Australian German Shepherd Dogs

(2013) Bethany J. Wilson et al.   PLoS One

The genomics of selection in dogs and the parallel evolution between dogs and humans

(2013) Guo-dong Wang et al.   Nature Communications

Genetic Recombination Is Targeted towards Gene Promoter Regions in Dogs

(2013) Adam Auton et al.   PLoS Genetics

Evolutionary genomics of dog domestication

(2012) Robert K. Wayne et al.   MAMMALIAN GENOME

Environmental Effects on Compulsive Tail Chasing in Dogs

(2012) Katriina Tiira et al.   PLoS One

Genetic evidence of subaortic stenosis in the Newfoundland dog

(2012) S. B. Reist-Marti et al.   VETERINARY RECORD

Variation of BMP3 Contributes to Dog Breed Skull Diversity

(2012) Jeffrey J. Schoenebeck et al.   PLoS Genetics

A framework for variation discovery and genotyping using next-generation DNA sequencing data

(2011) Mark A DePristo et al.   NATURE GENETICS

LUPA: A European initiative taking advantage of the canine genome architecture for unravelling complex disorders in both human and dogs

(2011) Anne-Sophie Lequarré et al.   VETERINARY JOURNAL

Identification of Genomic Regions Associated with Phenotypic Variation between Dog Breeds using Selection Mapping

(2011) Amaury Vaysse et al.   PLoS Genetics

Man's Best Friend Becomes Biology's Best in Show: Genome Analyses in the Domestic Dog

(2010) Heidi G. Parker et al.   Annual Review of Genetics

Association of dopamine- and serotonin-related genes with canine aggression

(2010) J. Våge et al.   GENES BRAIN AND BEHAVIOR

Genome-wide SNP and haplotype analyses reveal a rich history underlying dog domestication

(2010) Bridgett M. vonHoldt et al.   NATURE

A Simple Genetic Architecture Underlies Morphological Variation in Dogs

(2010) Adam R. Boyko et al.   PLOS BIOLOGY

DOGSET: pre-designed primer sets for fine-scale mapping and DNA sequence interrogation in the dog

(2009) A. K. Wong et al.   ANIMAL GENETICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

A Comprehensive Linkage Map of the Dog Genome

(2009) A. K. Wong et al.   GENETICS

Linkage Disequilibrium and Demographic History of Wild and Domestic Canids

(2009) M. M. Gray et al.   GENETICS

A canine chromosome 7 locus confers compulsive disorder susceptibility

(2009) N H Dodman et al.   MOLECULAR PSYCHIATRY

An Expressed Fgf4 Retrogene Is Associated with Breed-Defining Chondrodysplasia in Domestic Dogs

(2009) H. G. Parker et al.   SCIENCE

Coat Variation in the Domestic Dog Is Governed by Variants in Three Genes

(2009) E. Cadieu et al.   SCIENCE

Assortative mating and fragmentation within dog breeds

(2008) Susanne Björnerfeldt et al.   BMC EVOLUTIONARY BIOLOGY

A Mutation in Hairless Dogs Implicates FOXI3 in Ectodermal Development

(2008) Cord Drögemüller et al.   SCIENCE