Ancestral Sequence Reconstruction: From Chemical Paleogenetics to Maximum Likelihood Algorithms and Beyond
出版年份 2021 全文链接
标题
Ancestral Sequence Reconstruction: From Chemical Paleogenetics to Maximum Likelihood Algorithms and Beyond
作者
关键词
-
出版物
JOURNAL OF MOLECULAR EVOLUTION
Volume -, Issue -, Pages -
出版商
Springer Science and Business Media LLC
发表日期
2021-01-24
DOI
10.1007/s00239-021-09993-1
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Emerging Frontiers in the Study of Molecular Evolution
- (2020) David A. Liberles et al. JOURNAL OF MOLECULAR EVOLUTION
- A pneumonia outbreak associated with a new coronavirus of probable bat origin
- (2020) Peng Zhou et al. NATURE
- Exploring the therapeutic potential of modern and ancestral phenylalanine/tyrosine ammonia-lyases as supplementary treatment of hereditary tyrosinemia
- (2020) Natalie M. Hendrikse et al. Scientific Reports
- Protein Evolution in the Flaviviruses
- (2020) Miguel Arenas JOURNAL OF MOLECULAR EVOLUTION
- Elaboration of the Corticosteroid Synthesis Pathway in Primates through a Multistep Enzyme
- (2020) Carrie F Olson-Manning MOLECULAR BIOLOGY AND EVOLUTION
- Alignment-Integrated Reconstruction of Ancestral Sequences Improves Accuracy
- (2020) Kelsey Aadland et al. Genome Biology and Evolution
- A SARS-CoV-2 vaccine candidate would likely match all currently circulating variants
- (2020) Bethany Dearlove et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Why and how to study genetic changes with context-dependent effects
- (2019) Yuichi Eguchi et al. CURRENT OPINION IN GENETICS & DEVELOPMENT
- Alignment Modulates Ancestral Sequence Reconstruction Accuracy
- (2018) Ricardo Assunção Vialle et al. MOLECULAR BIOLOGY AND EVOLUTION
- Phylogeny Estimation by Integration over Isolation with Migration Models
- (2018) Jody Hey et al. MOLECULAR BIOLOGY AND EVOLUTION
- Using the Mutation-Selection Framework to Characterize Selection on Protein Sequences
- (2018) Ashley Teufel et al. Genes
- Ancestral sequence reconstruction: accounting for structural information by averaging over replacement matrices
- (2018) Asher Moshe et al. BIOINFORMATICS
- Mechanochemical evolution of the giant muscle protein titin as inferred from resurrected proteins
- (2017) Aitor Manteca et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- A new parameter-rich structure-aware mechanistic model for amino acid substitution during evolution
- (2017) Peter B. Chi et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- ProtASR: An Evolutionary Framework for Ancestral Protein Reconstruction with Selection on Folding Stability
- (2017) Miguel Arenas et al. SYSTEMATIC BIOLOGY
- Mechanochemical evolution of the giant muscle protein titin as inferred from resurrected proteins
- (2017) Aitor Manteca et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Exploring the past and the future of protein evolution with ancestral sequence reconstruction: the 'retro approach to protein engineering
- (2016) Y. Gumulya et al. BIOCHEMICAL JOURNAL
- Selection on metabolic pathway function in the presence of mutation-selection-drift balance leads to rate-limiting steps that are not evolutionarily stable
- (2016) Alena Orlenko et al. Biology Direct
- Flux Control in Glycolysis Varies Across the Tree of Life
- (2016) Alena Orlenko et al. JOURNAL OF MOLECULAR EVOLUTION
- Enhancing the pharmaceutical properties of protein drugs by ancestral sequence reconstruction
- (2016) Philip M Zakas et al. NATURE BIOTECHNOLOGY
- Selection on protein structure, interaction, and sequence
- (2016) Peter B. Chi et al. PROTEIN SCIENCE
- An experimental phylogeny to benchmark ancestral sequence reconstruction
- (2016) Ryan N. Randall et al. Nature Communications
- Parameterizing sequence alignment with an explicit evolutionary model
- (2015) Elena Rivas et al. BMC BIOINFORMATICS
- Assessing the prediction fidelity of ancestral reconstruction by a library approach
- (2015) Hagit Bar-Rogovsky et al. PROTEIN ENGINEERING DESIGN & SELECTION
- In Silico Reconstruction of the Viral Evolutionary Lineage Yields a Potent Gene Therapy Vector
- (2015) Eric Zinn et al. Cell Reports
- POY version 5: phylogenetic analysis using dynamic homologies under multiple optimality criteria
- (2014) Ward C. Wheeler et al. CLADISTICS
- Evolutionary history and metabolic insights of ancient mammalian uricases
- (2014) J. T. Kratzer et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Hyperstability and Substrate Promiscuity in Laboratory Resurrections of Precambrian β-Lactamases
- (2013) Valeria A. Risso et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Hydrophobic environment is a key factor for the stability of thermophilic proteins
- (2013) M. Michael Gromiha et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- Reconstitution of translation from Thermus thermophilus reveals a minimal set of components sufficient for protein synthesis at high temperatures and functional conservation of modern and ancient translation components
- (2012) Ying Zhou et al. NUCLEIC ACIDS RESEARCH
- Biophysical and structural considerations for protein sequence evolution
- (2011) Johan A Grahnen et al. BMC EVOLUTIONARY BIOLOGY
- Single-molecule paleoenzymology probes the chemistry of resurrected enzymes
- (2011) Raul Perez-Jimenez et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- A Population Genetics-Phylogenetics Approach to Inferring Natural Selection in Coding Sequences
- (2011) Daniel J. Wilson et al. PLoS Genetics
- Statistical Potentials for Improved Structurally Constrained Evolutionary Models
- (2010) Claudia L. Kleinman et al. MOLECULAR BIOLOGY AND EVOLUTION
- Feasibility of reconstructed ancestral H5N1 influenza viruses for cross-clade protective vaccine development
- (2010) M. F. Ducatez et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- A Dirichlet Process Covarion Mixture Model and Its Assessments Using Posterior Predictive Discrepancy Tests
- (2009) Yan Zhou et al. MOLECULAR BIOLOGY AND EVOLUTION
- A Site- and Time-Heterogeneous Model of Amino Acid Replacement
- (2008) Samuel Blanquart et al. MOLECULAR BIOLOGY AND EVOLUTION
- An Improved General Amino Acid Replacement Matrix
- (2008) S. Q. Le et al. MOLECULAR BIOLOGY AND EVOLUTION
- Palaeotemperature trend for Precambrian life inferred from resurrected proteins
- (2008) Eric A. Gaucher et al. NATURE
- Diversity and Evolution of Coral Fluorescent Proteins
- (2008) Naila O. Alieva et al. PLoS One
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now