Meta-transcriptomics indicates biotic cross-tolerance in willow trees cultivated on petroleum hydrocarbon contaminated soil

Degradation, Phytoprotection and Phytoremediation of Phenanthrene by Endophyte Pseudomonas putida, PD1

(2014) Zareen Khan et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Interkingdom Transfer of the Acne-Causing Agent, Propionibacterium acnes, from Human to Grapevine

(2014) Andrea Campisano et al.   MOLECULAR BIOLOGY AND EVOLUTION

Increasing phytoremediation efficiency and reliability using novel omics approaches

(2014) Terrence H. Bell et al.   TRENDS IN BIOTECHNOLOGY

EBSeq: an empirical Bayes hierarchical model for inference in RNA-seq experiments

(2013) Ning Leng et al.   BIOINFORMATICS

A comparison of methods for differential expression analysis of RNA-seq data

(2013) Charlotte Soneson et al.   BMC BIOINFORMATICS

The developing xylem transcriptome and genome-wide analysis of alternative splicing in Populus trichocarpa (black cottonwood) populations

(2013) Hua Bao et al.   BMC GENOMICS

A burst of ABC genes in the genome of the polyphagous spider mite Tetranychus urticae

(2013) Wannes Dermauw et al.   BMC GENOMICS

Expression of zinc and cadmium responsive genes in leaves of willow (Salix caprea L.) genotypes with different accumulation characteristics

(2013) Cornelia Konlechner et al.   ENVIRONMENTAL POLLUTION

Microbial expression profiles in the rhizosphere of willows depend on soil contamination

(2013) Etienne Yergeau et al.   ISME Journal

Linkage between bacterial and fungal rhizosphere communities in hydrocarbon-contaminated soils is related to plant phylogeny

(2013) Terrence H Bell et al.   ISME Journal

Sustainable bioenergy production from marginal lands in the US Midwest

(2013) Ilya Gelfand et al.   NATURE

Changes in potato phenylpropanoid metabolism during tuber development

(2013) Duroy A. Navarre et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Aluminum induces cross-resistance of potato to Phytophthora infestans

(2013) Magdalena Arasimowicz-Jelonek et al.   PLANTA

Herbivore exploits orally secreted bacteria to suppress plant defenses

(2013) S. H. Chung et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Investigating the drought-stress response of hybrid poplar genotypes by metabolite profiling

(2013) G. L. H. Barchet et al.   TREE PHYSIOLOGY

Biodegradation of Trichloroethylene by an Endophyte of Hybrid Poplar

(2012) Jun Won Kang et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Isolation and characterization of heavy metal tolerant Gram-positive bacteria with bioremedial properties from municipal waste rich soil of Kestopur canal (Kolkata), West Bengal, India

(2012) Kamala Gupta et al.   BIOLOGIA

Cysteine peptidases and their inhibitors in Tetranychus urticae: a comparative genomic approach

(2012) María Santamaría et al.   BMC GENOMICS

Enhanced Electricity Production by Use of Reconstituted Artificial Consortia of Estuarine Bacteria Grown as Biofilms

(2012) Jinwei Zhang et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Streaming fragment assignment for real-time analysis of sequencing experiments

(2012) Adam Roberts et al.   NATURE METHODS

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

RobiNA: a user-friendly, integrated software solution for RNA-Seq-based transcriptomics

(2012) M. Lohse et al.   NUCLEIC ACIDS RESEARCH

Tissue-type-specific transcriptome analysis identifies developing xylem-specific promoters in poplar

(2012) Jae-Heung Ko et al.   PLANT BIOTECHNOLOGY JOURNAL

Gene expression patterns underlying changes in xylem structure and function in response to increased nitrogen availability in hybrid poplar

(2012) LENKA PLAVCOVÁ et al.   PLANT CELL AND ENVIRONMENT

Manipulation of Plant Defense Responses by the Tomato Psyllid (Bactericerca cockerelli) and Its Associated Endosymbiont Candidatus Liberibacter Psyllaurous

(2012) Clare L. Casteel et al.   PLoS One

Metabolic diversity among main microorganisms inside an arsenic-rich ecosystem revealed by meta- and proteo-genomics

(2011) Philippe N Bertin et al.   ISME Journal

ACC Oxidase and ACC Synthase Expression Profiles after Leaning of Young Radiata (P. radiata D. Don) and Maritime Pine (P. pinaster Ait.) Seedlings

(2011) Patricio Ramos et al.   JOURNAL OF PLANT GROWTH REGULATION

Agriculture: Beyond food versus fuel

(2011) Duncan Graham-Rowe   NATURE

The genome of Tetranychus urticae reveals herbivorous pest adaptations

(2011) Miodrag Grbić et al.   NATURE

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Salt stress induces the formation of a novel type of ‘pressure wood’ in two Populus species

(2011) Dennis Janz et al.   NEW PHYTOLOGIST

Expression of a metallothionein A1 gene of Pisum sativum in white poplar enhances tolerance and accumulation of zinc and copper

(2011) Adelaide Turchi et al.   PLANT SCIENCE

Transcriptome analyses of Populus x euramericana clone I-214 leaves exposed to excess zinc

(2011) D. Di Baccio et al.   TREE PHYSIOLOGY

Metaorganisms as the new frontier

(2011) Thomas C.G. Bosch et al.   ZOOLOGY

The environmental and economic sustainability of potential bioethanol from willow in the UK

(2010) A.L. Stephenson et al.   BIORESOURCE TECHNOLOGY

Genomic analysis of carboxyl/cholinesterase genes in the silkworm Bombyx mori

(2010) Takuya Tsubota et al.   BMC GENOMICS

Reactive oxygen species and antioxidant machinery in abiotic stress tolerance in crop plants

(2010) Sarvajeet Singh Gill et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Diazotrophic endophytes of native black cottonwood and willow

(2010) Sharon L. Doty et al.   SYMBIOSIS

High nitrogen fertilization and stem leaning have overlapping effects on wood formation in poplar but invoke largely distinct molecular pathways

(2010) F. E. Pitre et al.   TREE PHYSIOLOGY

The characterization of willow (Salix L.) varieties for use in ecological engineering applications: Co-ordination of structure, function and autecology

(2009) Yulia A. Kuzovkina et al.   ECOLOGICAL ENGINEERING

Accumulation of selected heavy metals by different genotypes of Salix

(2009) Mirosław Mleczek et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

A novel, integrated approach to assessing social, economic and environmental implications of changing rural land-use: a case study of perennial biomass crops

(2009) Alison J. Haughton et al.   JOURNAL OF APPLIED ECOLOGY

Physiological and proteomic responses of two contrastingPopulus cathayanapopulations to drought stress

(2009) Xiangwen Xiao et al.   PHYSIOLOGIA PLANTARUM

Systemin-dependent salinity tolerance in tomato: evidence of specific convergence of abiotic and biotic stress responses

(2009) Francesco Orsini et al.   PHYSIOLOGIA PLANTARUM

Characterisation and coagulation performance of a tannin-based cationic polymer: A preliminary assessment

(2008) Nigel Graham et al.   COLLOIDS AND SURFACES A-PHYSICOCHEMICAL AND ENGINEERING ASPECTS

Phenylalanine ammonia-lyase (PAL) and cinnamate 4-hydroxylase (C4H) and catechins (flavan-3-ols) accumulation in tea

(2008) Kashmir Singh et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Characterization of the phenylalanine ammonia-lyase gene (SlPAL5) from tomato (Solanum lycopersicum L.)

(2008) Jia Guo et al.   MOLECULAR BIOLOGY REPORTS

Recent duplications dominate NBS-encoding gene expansion in two woody species

(2008) Sihai Yang et al.   MOLECULAR GENETICS AND GENOMICS

Enhancing phytoremediation through the use of transgenics and endophytes

(2008) Sharon Lafferty Doty   NEW PHYTOLOGIST

Bioenergy from plants and the sustainable yield challenge

(2008) Angela Karp et al.   NEW PHYTOLOGIST

A Rapid and effective method for RNA extraction from different tissues of grapevine and other woody plants

(2008) Giorgio Gambino et al.   PHYTOCHEMICAL ANALYSIS

Genome-wide identification of NBS resistance genes in Populus trichocarpa

(2008) Annegret Kohler et al.   PLANT MOLECULAR BIOLOGY