Transcriptome of the inner circular smooth muscle of the developing mouse intestine: Evidence for regulation of visceral smooth muscle genes by the hedgehog target gene,cJun

Distinct contextual roles for Notch signalling in skeletal muscle stem cells

(2014) Philippos Mourikis et al.   BMC DEVELOPMENTAL BIOLOGY

Familial visceral myopathy diagnosed by exome sequencing of a patient with chronic intestinal pseudo-obstruction

(2014) Øystein Holla et al.   ENDOSCOPY

Heterozygous De Novo and Inherited Mutations in the Smooth Muscle Actin (ACTG2) Gene Underlie Megacystis-Microcolon-Intestinal Hypoperistalsis Syndrome

(2014) Michael F. Wangler et al.   PLoS Genetics

FoxO transcription factors: their roles in the maintenance of skeletal muscle homeostasis

(2013) Anthony M. J. Sanchez et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Recombineering-based dissection of flanking and paralogous Hox gene functions in mouse reproductive tracts

(2013) A. M. Raines et al.   DEVELOPMENT

De novo ACTG2 mutations cause congenital distended bladder, microcolon, and intestinal hypoperistalsis

(2013) Willa Thorson et al.   HUMAN GENETICS

Specific Requirement of Gli Transcription Factors in Hedgehog-mediated Intestinal Development

(2013) He Huang et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The Transcription Factor TEAD1 Represses Smooth Muscle-specific Gene Expression by Abolishing Myocardin Function

(2013) Fang Liu et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

kmer-SVM: a web server for identifying predictive regulatory sequence features in genomic data sets

(2013) Christopher Fletez-Brant et al.   NUCLEIC ACIDS RESEARCH

TEAD1 controls C2C12 cell proliferation and differentiation and regulates three novel target genes

(2012) Fengli Wang et al.   CELLULAR SIGNALLING

Whole Exome Sequencing to Identify a Novel Gene (Caveolin-1) Associated With Human Pulmonary Arterial Hypertension

(2012) Eric D. Austin et al.   Circulation-Cardiovascular Genetics

Hedgehog and Wnt coordinate signaling in myogenic progenitors and regulate limb regeneration

(2012) Bhairab N. Singh et al.   DEVELOPMENTAL BIOLOGY

Comprehensive timeline of mesodermal development in the quail small intestine

(2012) Rebecca T. Thomason et al.   DEVELOPMENTAL DYNAMICS

Segregation of a Missense Variant in Enteric Smooth Muscle Actin γ-2 With Autosomal Dominant Familial Visceral Myopathy

(2012) Heli J. Lehtonen et al.   GASTROENTEROLOGY

Smooth muscle caldesmon modulates peristalsis in the wild type and non-innervated zebrafish intestine

(2012) J. Abrams et al.   NEUROGASTROENTEROLOGY AND MOTILITY

Inhibition of Gli1 results in altered c-Jun activation, inhibition of cisplatin-induced upregulation of ERCC1, XPD and XRCC1 and inhibition of platinum–DNA adduct repair

(2012) K Kudo et al.   ONCOGENE

Hedgehog-responsive mesenchymal clusters direct patterning and emergence of intestinal villi

(2012) K. D. Walton et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

DREME: motif discovery in transcription factor ChIP-seq data

(2011) Timothy L. Bailey   BIOINFORMATICS

TEAD1-dependent expression of the FoxO3a gene in mouse skeletal muscle

(2011) Haifang Qiu et al.   BMC MOLECULAR BIOLOGY

Transcription factor TEAD4 regulates expression of Myogenin and the unfolded protein response genes during C2C12 cell differentiation

(2011) A Benhaddou et al.   CELL DEATH AND DIFFERENTIATION

Hedgehog signaling controls homeostasis of adult intestinal smooth muscle

(2011) William J. Zacharias et al.   DEVELOPMENTAL BIOLOGY

Neurofibromin (Nf1) is required for skeletal muscle development

(2011) Nadine Kossler et al.   HUMAN MOLECULAR GENETICS

A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo

(2011) Graciana Diez-Roux et al.   PLOS BIOLOGY

Smooth muscle differentiation and patterning in the urinary bladder

(2010) Gregory Tasian et al.   DIFFERENTIATION

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

A Systems Approach Reveals that the Myogenesis Genome Network Is Regulated by the Transcriptional Repressor RP58

(2009) Shigetoshi Yokoyama et al.   DEVELOPMENTAL CELL

Paracrine Hedgehog Signaling in Stomach and Intestine: New Roles for Hedgehog in Gastrointestinal Patterning

(2009) Åsa Kolterud et al.   GASTROENTEROLOGY

Signalling molecules involved in mouse bladder smooth muscle cellular differentiation

(2009) Benchun Liu et al.   INTERNATIONAL JOURNAL OF DEVELOPMENTAL BIOLOGY

Three-generation Familial Visceral Myopathy With α-actin–positive Inclusion Bodies in Intestinal Smooth Muscle

(2009) Taina Sipponen et al.   JOURNAL OF CLINICAL GASTROENTEROLOGY

FATAL CONGENITAL MYOPATHY AND GASTROINTESTINAL PSEUDO-OBSTRUCTION DUE TO POLG1 MUTATIONS

(2009) C. Giordano et al.   NEUROLOGY

Cooperation between GLI and JUN enhances transcription of JUN and selected GLI target genes

(2009) S Laner-Plamberger et al.   ONCOGENE

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Forkhead Transcription Factors and Cardiovascular Biology

(2008) Kyriakos N. Papanicolaou et al.   CIRCULATION RESEARCH

Teashirt 3 is necessary for ureteral smooth muscle differentiation downstream of SHH and BMP4

(2008) X. Caubit et al.   DEVELOPMENT

Building it up and taking it down: The regulation of vertebrate ciliogenesis

(2008) Nicole Santos et al.   DEVELOPMENTAL DYNAMICS

Physiology of Normal Esophageal Motility

(2008) Raj K. Goyal et al.   JOURNAL OF CLINICAL GASTROENTEROLOGY

DiRE: identifying distant regulatory elements of co-expressed genes

(2008) V. Gotea et al.   NUCLEIC ACIDS RESEARCH

Deficient α-smooth muscle actin as a cause of functional intestinal obstruction in childhood

(2008) Anne-Marie O’ Donnell et al.   PEDIATRIC SURGERY INTERNATIONAL

Chronic intestinal pseudo-obstruction

(2008) Alexandra Antonucci et al.   WORLD JOURNAL OF GASTROENTEROLOGY

Model-based Analysis of ChIP-Seq (MACS)

(2008) Yong Zhang et al.   GENOME BIOLOGY