Diverse Routes toward Early Somites in the Mouse Embryo

A Tgfbr1/Snai1-dependent developmental module at the core of vertebrate axial elongation

(2020) André Dias et al.   eLife

A single-cell molecular map of mouse gastrulation and early organogenesis

(2019) Blanca Pijuan-Sala et al.   NATURE

The single-cell transcriptional landscape of mammalian organogenesis

(2019) Junyue Cao et al.   NATURE

Optimal-Transport Analysis of Single-Cell Gene Expression Identifies Developmental Trajectories in Reprogramming

(2019) Geoffrey Schiebinger et al.   CELL

Genetic regulation of amphioxus somitogenesis informs the evolution of the vertebrate head mesoderm

(2019) Daniel Aldea et al.   Nature Ecology & Evolution

JMJD3 regulates CD4+ T cell trafficking by targeting actin cytoskeleton regulatory gene Pdlim4

(2019) Chuntang Fu et al.   JOURNAL OF CLINICAL INVESTIGATION

Molecular architecture of lineage allocation and tissue organization in early mouse embryo

(2019) Guangdun Peng et al.   NATURE

A lineage-resolved molecular atlas of C. elegans embryogenesis at single-cell resolution

(2019) Jonathan S. Packer et al.   SCIENCE

Eomes and Brachyury control pluripotency exit and germ-layer segregation by changing the chromatin state

(2019) Jelena Tosic et al.   NATURE CELL BIOLOGY

Single-cell mapping of gene expression landscapes and lineage in the zebrafish embryo

(2018) Daniel E. Wagner et al.   SCIENCE

Detection and removal of barcode swapping in single-cell RNA-seq data

(2018) Jonathan A. Griffiths et al.   Nature Communications

Micropattern differentiation of mouse pluripotent stem cells recapitulates embryo regionalized cell fate patterning

(2018) Sophie M Morgani et al.   eLife

Divergent early mesoderm specification underlies distinct head and trunk muscle programmes in vertebrates

(2018) Nitya Nandkishore et al.   DEVELOPMENT

Massively parallel digital transcriptional profiling of single cells

(2017) Grace X. Y. Zheng et al.   Nature Communications

Diffusion pseudotime robustly reconstructs lineage branching

(2016) Laleh Haghverdi et al.   NATURE METHODS

Position-dependent plasticity of distinct progenitor types in the primitive streak

(2016) Filip J Wymeersch et al.   eLife

destiny: diffusion maps for large-scale single-cell data in R

(2015) Philipp Angerer et al.   BIOINFORMATICS

FOXL2 modulates cartilage, skeletal development and IGF1-dependent growth in mice

(2015) Mara Marongiu et al.   BMC DEVELOPMENTAL BIOLOGY

Lineage tracing of neuromesodermal progenitors reveals novel Wnt-dependent roles in trunk progenitor cell maintenance and differentiation

(2015) R. J. Garriock et al.   DEVELOPMENT

Neuromesodermal progenitors and the making of the spinal cord

(2015) D. Henrique et al.   DEVELOPMENT

Differentiation of pluripotent stem cells to muscle fiber to model Duchenne muscular dystrophy

(2015) Jérome Chal et al.   NATURE BIOTECHNOLOGY

Epithelial–Mesenchymal Plasticity: A Central Regulator of Cancer Progression

(2015) Xin Ye et al.   TRENDS IN CELL BIOLOGY

The Molecular Signatures Database Hallmark Gene Set Collection

(2015) Arthur Liberzon et al.   Cell Systems

Retinoic acid controls body axis extension by directly repressing Fgf8 transcription

(2014) S. Kumar et al.   DEVELOPMENT

Signalling dynamics in vertebrate segmentation

(2014) Alexis Hubaud et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Activity-Modulating Monoclonal Antibodies to the Human Serine Protease HtrA3 Provide Novel Insights into Regulating HtrA Proteolytic Activities

(2014) Harmeet Singh et al.   PLoS One

A Mesodermal Factor, T, Specifies Mouse Germ Cell Fate by Directly Activating Germline Determinants

(2013) Shinya Aramaki et al.   DEVELOPMENTAL CELL

Genome engineering using the CRISPR-Cas9 system

(2013) F Ann Ran et al.   Nature Protocols

Interaction of Wnt3a, Msgn1 and Tbx6 in neural versus paraxial mesoderm lineage commitment and paraxial mesoderm differentiation in the mouse embryo

(2012) Sonja Nowotschin et al.   DEVELOPMENTAL BIOLOGY

Fiji: an open-source platform for biological-image analysis

(2012) Johannes Schindelin et al.   NATURE METHODS

Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation

(2012) Davis J. McCarthy et al.   NUCLEIC ACIDS RESEARCH

An eye on the head: the development and evolution of craniofacial muscles

(2011) R. Sambasivan et al.   DEVELOPMENT

Tbx6-dependent Sox2 regulation determines neural or mesodermal fate in axial stem cells

(2011) Tatsuya Takemoto et al.   NATURE

Inhibition of glycogen synthase kinase-3 alleviates Tcf3 repression of the pluripotency network and increases embryonic stem cell resistance to differentiation

(2011) Jason Wray et al.   NATURE CELL BIOLOGY

Brachyury establishes the embryonic mesodermal progenitor niche

(2010) B. L. Martin et al.   GENES & DEVELOPMENT

A Pax3/Dmrt2/Myf5 Regulatory Cascade Functions at the Onset of Myogenesis

(2010) Takahiko Sato et al.   PLoS Genetics

Stem cells, signals and vertebrate body axis extension

(2009) V. Wilson et al.   DEVELOPMENT

Redefining the Progression of Lineage Segregations during Mammalian Embryogenesis by Clonal Analysis

(2009) Elena Tzouanacou et al.   DEVELOPMENTAL CELL

Regulation of Canonical Wnt Signaling by Brachyury Is Essential for Posterior Mesoderm Formation

(2008) Benjamin L. Martin et al.   DEVELOPMENTAL CELL

The ground state of embryonic stem cell self-renewal

(2008) Qi-Long Ying et al.   NATURE