Comparative genomics of Klebsiella michiganensis BD177 and related members of Klebsiella sp. reveal the symbiotic relationship with Bactrocera dorsalis

Gut microbiota promotes host resistance to low-temperature stress by stimulating its arginine and proline metabolism pathway in adult Bactrocera dorsalis

(2020) Muhammad Fahim Raza et al.   PLoS Pathogens

Trading amino acids at the aphid–Buchnera symbiotic interface

(2019) Honglin Feng et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Symbiotic bacteria motivate the foraging decision and promote fecundity and survival of Bactrocera dorsalis (Diptera: Tephritidae)

(2019) Mazarin Akami et al.   BMC MICROBIOLOGY

Tephritid-microbial interactions to enhance fruit fly performance in sterile insect technique programs

(2019) Ania T. Deutscher et al.   BMC MICROBIOLOGY

Using average nucleotide identity to improve taxonomic assignments in prokaryotic genomes at the NCBI

(2018) Stacy Ciufo et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms

(2018) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Detoxifying symbiosis: microbe-mediated detoxification of phytotoxins and pesticides in insects

(2018) Hideomi Itoh et al.   NATURAL PRODUCT REPORTS

iPath3.0: interactive pathways explorer v3

(2018) Youssef Darzi et al.   NUCLEIC ACIDS RESEARCH

The Drosophila melanogaster Gut Microbiota Provisions Thiamine to Its Host

(2018) David R. Sannino et al.   mBio

The Divergence in Bacterial Components Associated with Bactrocera dorsalis across Developmental Stages

(2018) Xiaofeng Zhao et al.   Frontiers in Microbiology

Microbiota-Mediated Modulation of Organophosphate Insecticide Toxicity by Species-Dependent Interactions with Lactobacilli in a Drosophila melanogaster Insect Model

(2018) Brendan A. Daisley et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Microbiome Structure Influences Infection by the Parasite Crithidia bombi in Bumble Bees

(2018) Blair K. Mockler et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Intestinal probiotics restore the ecological fitness decline of Bactrocera dorsalis by irradiation

(2018) Zhaohui Cai et al.   Evolutionary Applications

Population structure of a global agricultural invasive pest, Bactrocera dorsalis (Diptera: Tephritidae)

(2018) Yu-jia Qin et al.   Evolutionary Applications

Enhanced fitness of aBactrocera cucurbitaegenetic sexing strain based on the addition of gut-isolated probiotics (Enterobacterspec.) to the larval diet

(2017) Mingyan Yao et al.   ENTOMOLOGIA EXPERIMENTALIS ET APPLICATA

Introducing EzBioCloud: a taxonomically united database of 16S rRNA gene sequences and whole-genome assemblies

(2017)   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Gut symbiont enhances insecticide resistance in a significant pest, the oriental fruit fly Bactrocera dorsalis (Hendel)

(2017) Daifeng Cheng et al.   Microbiome

Large-Scale Phylogenomics of the Lactobacillus casei Group Highlights Taxonomic Inconsistencies and Reveals Novel Clade-Associated Features

(2017) Sander Wuyts et al.   mSystems

Genomics and taxonomy in diagnostics for food security: soft-rotting enterobacterial plant pathogens

(2016) Leighton Pritchard et al.   Analytical Methods

Taxonomy, Ecology, and Management of Native and Exotic Fruit Fly Species in Africa

(2016) Sunday Ekesi et al.   Annual Review of Entomology

Commensal Bacteria Aid Mate-selection in the Fruit Fly, Bactrocera dorsalis

(2016) Kamala Jayanthi Pagadala Damodaram et al.   MICROBIAL ECOLOGY

PHI-base: a new interface and further additions for the multi-species pathogen–host interactions database

(2016) Martin Urban et al.   NUCLEIC ACIDS RESEARCH

KEGG: new perspectives on genomes, pathways, diseases and drugs

(2016) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

tRNAscan-SE On-line: integrating search and context for analysis of transfer RNA genes

(2016) Todd M. Lowe et al.   NUCLEIC ACIDS RESEARCH

Multiorganismal Insects: Diversity and Function of Resident Microorganisms

(2015) Angela E. Douglas   Annual Review of Entomology

“Wigglesworthia morsitans” Folate (Vitamin B9) Biosynthesis Contributes to Tsetse Host Fitness

(2015) Anna K. Snyder et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Roary: rapid large-scale prokaryote pan genome analysis

(2015) Andrew J. Page et al.   BIOINFORMATICS

Amino acid transporter expansions associated with the evolution of obligate endosymbiosis in sap-feeding insects (Hemiptera: sternorrhyncha)

(2015) Romain A Dahan et al.   BMC EVOLUTIONARY BIOLOGY

Evolutionary biology and genetic techniques for insect control

(2015) Philip T. Leftwich et al.   Evolutionary Applications

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

(2015) Donovan H. Parks et al.   GENOME RESEARCH

BacDive – The Bacterial Diversity Metadatabase in 2016

(2015) Carola Söhngen et al.   NUCLEIC ACIDS RESEARCH

eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences

(2015) Jaime Huerta-Cepas et al.   NUCLEIC ACIDS RESEARCH

Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation

(2015) Nuala A. O'Leary et al.   NUCLEIC ACIDS RESEARCH

Gut microbiota mediate caffeine detoxification in the primary insect pest of coffee

(2015) Javier A. Ceja-Navarro et al.   Nature Communications

Microbes Promote Amino Acid Harvest to Rescue Undernutrition in Drosophila

(2015) Ryuichi Yamada et al.   Cell Reports

Back to the future: the sterile insect technique against mosquito disease vectors

(2015) Rosemary Susan Lees et al.   Current Opinion in Insect Science

Exploitation of the Medfly Gut Microbiota for the Enhancement of Sterile Insect Technique: Use of Enterobacter sp. in Larval Diet-Based Probiotic Applications

(2015) Antonios A. Augustinos et al.   PLoS One

Prokka: rapid prokaryotic genome annotation

(2014) T. Seemann   BIOINFORMATICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Gut microbiota dictates the metabolic response of Drosophila to diet

(2014) A. C.- N. Wong et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Fast and sensitive protein alignment using DIAMOND

(2014) Benjamin Buchfink et al.   NATURE METHODS

Expanded microbial genome coverage and improved protein family annotation in the COG database

(2014) Michael Y. Galperin et al.   NUCLEIC ACIDS RESEARCH

Rfam 12.0: updates to the RNA families database

(2014) Eric P. Nawrocki et al.   NUCLEIC ACIDS RESEARCH

Development of probiotic diets for the olive fly: evaluation of their effects on fly longevity and fecundity

(2013) P. Sacchetti et al.   ANNALS OF APPLIED BIOLOGY

QUAST: quality assessment tool for genome assemblies

(2013) Alexey Gurevich et al.   BIOINFORMATICS

Fitness Improvement of Mass-Reared Sterile Males of Ceratitis capitata (Vienna 8 strain) (Diptera: Tephritidae) After Gut Enrichment With Probiotics

(2013) Heithem Hamden et al.   JOURNAL OF ECONOMIC ENTOMOLOGY

The carbohydrate-active enzymes database (CAZy) in 2013

(2013) Vincent Lombard et al.   NUCLEIC ACIDS RESEARCH

Identification of cultivable bacteria in the intestinal tract ofBactrocera dorsalisfrom three different populations and determination of their attractive potential

(2013) Hongxiu Wang et al.   PEST MANAGEMENT SCIENCE

Phylogenetic, Metabolic, and Taxonomic Diversities Shape Mediterranean Fruit Fly Microbiotas during Ontogeny

(2012) Yael Aharon et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Bacteria as vitamin suppliers to their host: a gut microbiota perspective

(2012) Jean Guy LeBlanc et al.   CURRENT OPINION IN BIOTECHNOLOGY

Symbiont-mediated insecticide resistance

(2012) Y. Kikuchi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

PHAST: A Fast Phage Search Tool

(2011) Y. Zhou et al.   NUCLEIC ACIDS RESEARCH

Drosophila Microbiome Modulates Host Developmental and Metabolic Homeostasis via Insulin Signaling

(2011) S. C. Shin et al.   SCIENCE

Effects of dietary folic acid level and symbiotic folate production on fitness and development in the fruit flyDrosophilamelanogaster

(2010) Sydella Blatch et al.   FLY

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

SOAP2: an improved ultrafast tool for short read alignment

(2009) R. Li et al.   BIOINFORMATICS

Manipulation of the microbiota of mass-reared Mediterranean fruit flies Ceratitis capitata (Diptera: Tephritidae) improves sterile male sexual performance

(2009) Eyal Ben Ami et al.   ISME Journal

Optimizing Irradiation Dose for Sterility Induction and Quality of Bactrocera tryoni

(2009) S. R. Collins et al.   JOURNAL OF ECONOMIC ENTOMOLOGY

Shifting the genomic gold standard for the prokaryotic species definition

(2009) Michael Richter et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Consensus generation and variant detection by Celera Assembler

(2008) G. Denisov et al.   BIOINFORMATICS

Gut bacterial communities in the Mediterranean fruit fly (Ceratitis capitata) and their impact on host longevity

(2008) A. Behar et al.   JOURNAL OF INSECT PHYSIOLOGY

ARDB--Antibiotic Resistance Genes Database

(2008) B. Liu et al.   NUCLEIC ACIDS RESEARCH