Expanded roles of pyruvate-sensing PdhR in transcription regulation of the Escherichia coli K-12 genome: fatty acid catabolism and cell motility

Regulatory Role of PlaR (YiaJ) for Plant Utilization in Escherichia coli K-12

(2019) Tomohiro Shimada et al.   Scientific Reports

Single-target regulators form a minor group of transcription factors in Escherichia coli K-12

(2018) Tomohiro Shimada et al.   NUCLEIC ACIDS RESEARCH

A Single-Cell View of the BtsSR/YpdAB Pyruvate Sensing Network in Escherichia coli and Its Biological Relevance

(2017) Cláudia Vilhena et al.   JOURNAL OF BACTERIOLOGY

Building a complete image of genome regulation in the model organism Escherichia coli

(2017) Akira Ishihama   JOURNAL OF GENERAL AND APPLIED MICROBIOLOGY

The whole set of the constitutive promoters recognized by four minor sigma subunits of Escherichia coli RNA polymerase

(2017) Tomohiro Shimada et al.   PLoS One

Transcription profile ofEscherichia coli: genomic SELEX search for regulatory targets of transcription factors

(2016) Akira Ishihama et al.   NUCLEIC ACIDS RESEARCH

Expanded roles of two-component response regulator OmpR inEscherichia coli: genomic SELEX search for novel regulation targets

(2015) Tomohiro Shimada et al.   GENES TO CELLS

Target of rapamycin (TOR) plays a critical role in triacylglycerol accumulation in microalgae

(2015) Sousuke Imamura et al.   PLANT MOLECULAR BIOLOGY

A Novel Dual Allosteric Activation Mechanism of Escherichia coli ADP-Glucose Pyrophosphorylase: The Role of Pyruvate

(2014) Matías D. Asención Diez et al.   PLoS One

Transcriptional Repressor HipB Regulates the Multiple Promoters in Escherichia coli

(2013) Chun-Yi Lin et al.   JOURNAL OF MOLECULAR MICROBIOLOGY AND BIOTECHNOLOGY

Systematic identification of allosteric protein-metabolite interactions that control enzyme activity in vivo

(2013) Hannes Link et al.   NATURE BIOTECHNOLOGY

Enhancing fatty acid production by the expression of the regulatory transcription factor FadR

(2012) Fuzhong Zhang et al.   METABOLIC ENGINEERING

The global repressor FliZ antagonizes gene expression by σ S -containing RNA polymerase due to overlapping DNA binding specificity

(2012) Christina Pesavento et al.   NUCLEIC ACIDS RESEARCH

RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more

(2012) Heladia Salgado et al.   NUCLEIC ACIDS RESEARCH

Crosstalk of Escherichia coli FadR with Global Regulators in Expression of Fatty Acid Transport Genes

(2012) Youjun Feng et al.   PLoS One

Prokaryotic genome regulation: A revolutionary paradigm

(2012) Akira ISHIHAMA   PROCEEDINGS OF THE JAPAN ACADEMY SERIES B-PHYSICAL AND BIOLOGICAL SCIENCES

More than just a metabolic regulator - elucidation and validation of new targets of PdhR in Escherichia coli

(2011) Anna-Katharina Göhler et al.   BMC Systems Biology

Novel roles of LeuO in transcription regulation of E. coli genome: antagonistic interplay with the universal silencer H-NS

(2011) Tomohiro Shimada et al.   MOLECULAR MICROBIOLOGY

Novel Roles of cAMP Receptor Protein (CRP) in Regulation of Transport and Metabolism of Carbon Sources

(2011) Tomohiro Shimada et al.   PLoS One

Reprogramming of Escherichia coli K-12 Metabolism during the Initial Phase of Transition from an Anaerobic to a Micro-Aerobic Environment

(2011) Eleanor W. Trotter et al.   PLoS One

Overlapping Repressor Binding Sites Result in Additive Regulation of Escherichia coli FadH by FadR and ArcA

(2010) Y. Feng et al.   JOURNAL OF BACTERIOLOGY

Novel Members of the Cra Regulon Involved in Carbon Metabolism in Escherichia coli

(2010) T. Shimada et al.   JOURNAL OF BACTERIOLOGY

Quantitative analysis and engineering of fatty acid biosynthesis in E. coli

(2010) Tiangang Liu et al.   METABOLIC ENGINEERING

Structural overview on the allosteric activation of cyclic AMP receptor protein

(2009) Hyung-Sik Won et al.   BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS

The ArcBA Two-Component System of Escherichia coli Is Regulated by the Redox State of both the Ubiquinone and the Menaquinone Pool

(2009) M. Bekker et al.   JOURNAL OF BACTERIOLOGY

Cyclic AMP-Dependent Catabolite Repression Is the Dominant Control Mechanism of Metabolic Fluxes under Glucose Limitation in Escherichia coli

(2008) A. Nanchen et al.   JOURNAL OF BACTERIOLOGY

cAMP Receptor Protein from Escherichia coli as a Model of Signal Transduction in Proteins – A Review

(2008) E. Fic et al.   JOURNAL OF MOLECULAR MICROBIOLOGY AND BIOTECHNOLOGY

Overproduction of free fatty acids in E. coli: Implications for biodiesel production

(2008) Xuefeng Lu et al.   METABOLIC ENGINEERING

The Escherichia coli RutR transcription factor binds at targets within genes as well as intergenic regions

(2008) Tomohiro Shimada et al.   NUCLEIC ACIDS RESEARCH