Palaeoclimate ocean conditions shaped the evolution of corals and their skeletons through deep time

Full in vivo characterization of carbonate chemistry at the site of calcification in corals

(2019) Duygu S. Sevilgen et al.   Science Advances

Earth history and the passerine superradiation

(2019) Carl H. Oliveros et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis

(2019) Remco Bouckaert et al.   PLoS Computational Biology

New non-bilaterian transcriptomes provide novel insights into the evolution of coral skeletomes.

(2019) Nicola Conci et al.   Genome Biology and Evolution

How corals made rocks through the ages

(2019) Jeana L. Drake et al.   GLOBAL CHANGE BIOLOGY

Mitogenomics suggests a sister relationship of Relicanthus daphneae (Cnidaria: Anthozoa: Hexacorallia: incerti ordinis) with Actiniaria

(2019) Madelyne Xiao et al.   Scientific Reports

ASTRAL-III: polynomial time species tree reconstruction from partially resolved gene trees

(2018) Chao Zhang et al.   BMC BIOINFORMATICS

Phylogenomics provides a robust topology of the major cnidarian lineages and insights on the origins of key organismal traits

(2018) Ehsan Kayal et al.   BMC EVOLUTIONARY BIOLOGY

TreeShrink: fast and accurate detection of outlier long branches in collections of phylogenetic trees

(2018) Uyen Mai et al.   BMC GENOMICS

So many genes, so little time: A practical approach to divergence-time estimation in the genomic era

(2018) Stephen A. Smith et al.   PLoS One

Coral reefs will transition to net dissolving before end of century

(2018) Bradley D. Eyre et al.   SCIENCE

Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7

(2018) Andrew Rambaut et al.   SYSTEMATIC BIOLOGY

Paleoecological Response of Corals to the End-Triassic Mass Extinction: An Integrational Analysis

(2018) George D. Stanley et al.   Journal of Earth Science

Integrated evidence reveals a new species in the ancient blue coral genus Heliopora (Octocorallia)

(2018) Zoe T. Richards et al.   Scientific Reports

Temperature dependence of aragonite and calcite skeleton formation by a scleractinian coral in low mMg/Ca seawater

(2017) Tomihiko Higuchi et al.   GEOLOGY

Universal target-enrichment baits for anthozoan (Cnidaria) phylogenomics: New approaches to long-standing problems

(2017) Andrea M. Quattrini et al.   Molecular Ecology Resources

The Past Sure is Tense: On Interpreting Phylogenetic Divergence Time Estimates

(2017) Joseph W Brown et al.   SYSTEMATIC BIOLOGY

Three decades of coral reef community dynamics in St. John, USVI: a contrast of scleractinians and octocorals

(2017) Georgios Tsounis et al.   Ecosphere

Empty Niches after Extinctions Increase Population Sizes of Modern Corals

(2016) Carlos Prada et al.   CURRENT BIOLOGY

Transformation of Mg-bearing amorphous calcium carbonate to Mg-calcite – In situ monitoring

(2016) Bettina Purgstaller et al.   GEOCHIMICA ET COSMOCHIMICA ACTA

Cryptic regime shift in benthic community structure on shallow reefs in St. John, US Virgin Islands

(2016) PJ Edmunds et al.   MARINE ECOLOGY PROGRESS SERIES

RevBayes: Bayesian Phylogenetic Inference Using Graphical Models and an Interactive Model-Specification Language

(2016) Sebastian Höhna et al.   SYSTEMATIC BIOLOGY

Comparative genomics explains the evolutionary success of reef-forming corals

(2016) Debashish Bhattacharya et al.   eLife

Cryptic regime shift in benthic community structure on shallow reefs in St. John, US Virgin Islands

(2016) PJ Edmunds et al.   MARINE ECOLOGY PROGRESS SERIES

PHYLUCE is a software package for the analysis of conserved genomic loci

(2015) Brant C. Faircloth   BIOINFORMATICS

Aragonite-calcite seas—Quantifying the gray area

(2015) Uwe Balthasar et al.   GEOLOGY

Phylogenomic Analyses Support Traditional Relationships within Cnidaria

(2015) Felipe Zapata et al.   PLoS One

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

ExaBayes: Massively Parallel Bayesian Tree Inference for the Whole-Genome Era

(2014) Andre J. Aberer et al.   MOLECULAR BIOLOGY AND EVOLUTION

Biotic Control of Skeletal Growth by Scleractinian Corals in Aragonite–Calcite Seas

(2014) Tomihiko Higuchi et al.   PLoS One

Octocoral Tissue Provides Protection from Declining Oceanic pH

(2014) Yasmin Gabay et al.   PLoS One

Spatial community shift from hard to soft corals in acidified water

(2013) Shihori Inoue et al.   Nature Climate Change

Sea anemones may thrive in a high CO2 world

(2012) David J. Suggett et al.   GLOBAL CHANGE BIOLOGY

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

PartitionFinder: Combined Selection of Partitioning Schemes and Substitution Models for Phylogenetic Analyses

(2012) R. Lanfear et al.   MOLECULAR BIOLOGY AND EVOLUTION

The ancient evolutionary origins of Scleractinia revealed by azooxanthellate corals

(2011) Jarosław Stolarski et al.   BMC EVOLUTIONARY BIOLOGY

Coral biomineralization: From the gene to the environment

(2011) Sylvie Tambutté et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

Coral Reefs and Ocean Acidification

(2011) Joan Kleypas et al.   OCEANOGRAPHY

Projecting Coral Reef Futures Under Global Warming and Ocean Acidification

(2011) J. M. Pandolfi et al.   SCIENCE

phytools: an R package for phylogenetic comparative biology (and other things)

(2011) Liam J. Revell   Methods in Ecology and Evolution

The Newick utilities: high-throughput phylogenetic tree processing in the UNIX shell

(2010) T. Junier et al.   BIOINFORMATICS

On the potential for ocean acidification to be a general cause of ancient reef crises

(2010) WOLFGANG KIESSLING et al.   GLOBAL CHANGE BIOLOGY

Ocean Warming Slows Coral Growth in the Central Red Sea

(2010) N. E. Cantin et al.   SCIENCE

Calcite and Aragonite Precipitation Under Controlled Instantaneous Supersaturation: Elucidating the Role of CaCO3 Saturation State and Mg/Ca Ratio on Calcium Carbonate Polymorphism

(2009) V. De Choudens-Sanchez et al.   JOURNAL OF SEDIMENTARY RESEARCH

Declining Coral Calcification on the Great Barrier Reef

(2009) G. De'ath et al.   SCIENCE

Accounting for Calibration Uncertainty in Phylogenetic Estimation of Evolutionary Divergence Times

(2009) Simon Y. W. Ho et al.   SYSTEMATIC BIOLOGY

One-Third of Reef-Building Corals Face Elevated Extinction Risk from Climate Change and Local Impacts

(2008) K. E. Carpenter et al.   SCIENCE