GADD34 is a modulator of autophagy during starvation

Co-optation of Tandem DNA Repeats for the Maintenance of Mesenchymal Identity

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Starvation induces rapid degradation of selective autophagy receptors by endosomal microautophagy

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The PRIDE database and related tools and resources in 2019: improving support for quantification data

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PPP1R15A-mediated dephosphorylation of eIF2α is unaffected by Sephin1 or Guanabenz

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TFEB and TFE3 are novel components of the integrated stress response

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The integrated stress response

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Upstream Open Reading Frames Differentially Regulate Gene-specific Translation in the Integrated Stress Response

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TFEB at a glance

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An evolutionarily conserved pathway controls proteasome homeostasis

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Autophagosome–lysosome fusion triggers a lysosomal response mediated by TLR9 and controlled by OCRL

(2016) Maria Giovanna De Leo et al.   NATURE CELL BIOLOGY

Systematic discovery of cap-independent translation sequences in human and viral genomes

(2016) Shira Weingarten-Gabbay et al.   SCIENCE

mTORC1 and CK2 coordinate ternary and eIF4F complex assembly

(2016) Valentina Gandin et al.   Nature Communications

GADD34 Keeps the mTOR Pathway Inactivated in Endoplasmic Reticulum Stress Related Autophagy

(2016) Marianna Holczer et al.   PLoS One

Lysoplex: An efficient toolkit to detect DNA sequence variations in the autophagy-lysosomal pathway

(2015) Giuseppina Di Fruscio et al.   Autophagy

ChIPseeker: an R/Bioconductor package for ChIP peak annotation, comparison and visualization

(2015) Guangchuang Yu et al.   BIOINFORMATICS

Lysosomal calcium signalling regulates autophagy through calcineurin and TFEB

(2015) Diego L. Medina et al.   NATURE CELL BIOLOGY

SWATH enables precise label-free quantification on proteome scale

(2015) Qiang Huang et al.   PROTEOMICS

The Ribosome as a Hub for Protein Quality Control

(2013) Sebastian Pechmann et al.   MOLECULAR CELL

Mapping differential interactomes by affinity purification coupled with data-independent mass spectrometry acquisition

(2013) Jean-Philippe Lambert et al.   NATURE METHODS

The eIF2α/ATF4 pathway is essential for stress-induced autophagy gene expression

(2013) Wafa B’chir et al.   NUCLEIC ACIDS RESEARCH

miRNAs confer phenotypic robustness to gene networks by suppressing biological noise

(2013) Velia Siciliano et al.   Nature Communications

Fiji: an open-source platform for biological-image analysis

(2012) Johannes Schindelin et al.   NATURE METHODS

Fast gapped-read alignment with Bowtie 2

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Global mapping of translation initiation sites in mammalian cells at single-nucleotide resolution

(2012) S. Lee et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Gadd34 induces autophagy through the suppression of the mTOR pathway during starvation

(2011) Mohammad Nizam Uddin et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

GADD34 mediates cytoprotective autophagy in mutant huntingtin expressing cells via the mTOR pathway

(2011) Alise Hyrskyluoto et al.   EXPERIMENTAL CELL RESEARCH

Construction and Modelling of an Inducible Positive Feedback Loop Stably Integrated in a Mammalian Cell-Line

(2011) Velia Siciliano et al.   PLoS Computational Biology

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

An Upstream Open Reading Frame Regulates Translation of GADD34 during Cellular Stresses That Induce eIF2α Phosphorylation

(2009) Yun-Young Lee et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

Autophagy in the Pathogenesis of Disease

(2008) Beth Levine et al.   CELL

Model-based Analysis of ChIP-Seq (MACS)

(2008) Yong Zhang et al.   GENOME BIOLOGY