Development of Chromosome Segment Substitution Lines (CSSLs) Derived from Guangxi Wild Rice (Oryza rufipogon Griff.) under Rice (Oryza sativa L.) Background and the Identification of QTLs for Plant Architecture, Agronomic Traits and Cold Tolerance

Genetic characterization of the chromosome single-segment substitution lines of O. glumaepatula and O. barthii and identification of QTLs for yield-related traits

(2019) Hanwei Zhao et al.   MOLECULAR BREEDING

Construction of chromosome segment substitution lines of Dongxiang common wild rice (Oryza rufipogon Griff.) in the background of the japonica rice cultivar Nipponbare (Oryza sativa L.)

(2019) Xiaoding Ma et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Identification of Genes Related to Cold Tolerance and a Functional Allele That Confers Cold Tolerance

(2018) Ning Xiao et al.   PLANT PHYSIOLOGY

Proteomic response of hybrid wild rice to cold stress at the seedling stage

(2018) Jinzi Wang et al.   PLoS One

Analysis of Epistasis among QTLs on Heading Date based on Single Segment Substitution Lines in Rice

(2018) Zifeng Yang et al.   Scientific Reports

GRAIN INCOMPLETE FILLING 2regulates grain filling and starch synthesis during rice caryopsis development

(2017) Xiangjin Wei et al.   Journal of Integrative Plant Biology

Development and characterization of chromosome segment substitution lines derived from Oryza rufipogon in the genetic background of O. sativa spp. indica cultivar 9311

(2016) Weihua Qiao et al.   BMC GENOMICS

RLS3, a protein with AAA+ domain localized in chloroplast, sustains leaf longevity in rice

(2016) Yanhui Lin et al.   Journal of Integrative Plant Biology

Precise estimation of genomic regions controlling lodging resistance using a set of reciprocal chromosome segment substitution lines in rice

(2016) Taiichiro Ookawa et al.   Scientific Reports

Detection and characterization of epistasis between QTLs on plant height in rice using single segment substitution lines

(2015) Haitao Zhu et al.   BREEDING SCIENCE

One SNP in COLD1 Determines Cold Tolerance during Rice Domestication

(2015) Yiting Shi et al.   Journal of Genetics and Genomics

An-2 Encodes a Cytokinin Synthesis Enzyme that Regulates Awn Length and Grain Production in Rice

(2015) Benguo Gu et al.   Molecular Plant

Map-Based Cloning of qSD1-2 Identified a Gibberellin Synthesis Gene Regulating the Development of Endosperm-Imposed Dormancy in Rice

(2015) Heng Ye et al.   PLANT PHYSIOLOGY

Development and evaluation of chromosome segment substitution lines (CSSLs) carrying chromosome segments derived from Oryza rufipogon in the genetic background of Oryza sativa L.

(2014) Tomoyuki Furuta et al.   BREEDING SCIENCE

RAN1 is involved in plant cold resistance and development in rice (Oryza sativa)

(2014) Peipei Xu et al.   JOURNAL OF EXPERIMENTAL BOTANY

An-1 Encodes a Basic Helix-Loop-Helix Protein That Regulates Awn Development, Grain Size, and Grain Number in Rice

(2013) J. Luo et al.   PLANT CELL

Molecular Evolution of the TAC1 Gene from Rice (Oryza sativa L.)

(2012) Jiahuan Jiang et al.   Journal of Genetics and Genomics

A rice orthologue of the ABA receptor, OsPYL/RCAR5, is a positive regulator of the ABA signal transduction pathway in seed germination and early seedling growth

(2011) Hyunmi Kim et al.   JOURNAL OF EXPERIMENTAL BOTANY

Genetic Control of a Transition from Black to Straw-White Seed Hull in Rice Domestication

(2011) B.-F. Zhu et al.   PLANT PHYSIOLOGY

SHORT GRAIN1 Decreases Organ Elongation and Brassinosteroid Response in Rice

(2011) H. Nakagawa et al.   PLANT PHYSIOLOGY

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Map-based cloning of the rice cold tolerance gene Ctb1

(2010) Koji Saito et al.   PLANT SCIENCE

Fine mapping of a gene for low-tiller number, Ltn, in japonica rice (Oryza sativa L.) variety Aikawa 1

(2010) Daisuke Fujita et al.   THEORETICAL AND APPLIED GENETICS

Quantitative Trait Loci (QTL) Analysis For Rice Grain Width and Fine Mapping of an Identified QTL Allele gw-5 in a Recombination Hotspot Region on Chromosome 5

(2008) X. Wan et al.   GENETICS

Control of a key transition from prostrate to erect growth in rice domestication

(2008) Lubin Tan et al.   NATURE GENETICS

Overexpression of OsiSAP8, a member of stress associated protein (SAP) gene family of rice confers tolerance to salt, drought and cold stress in transgenic tobacco and rice

(2008) Vydehi Kanneganti et al.   PLANT MOLECULAR BIOLOGY

Genetic dissection and pyramiding of quantitative traits for panicle architecture by using chromosomal segment substitution lines in rice

(2008) Tsuyu Ando et al.   THEORETICAL AND APPLIED GENETICS

Gene Nomenclature System for Rice

(2008) Susan R. McCouch et al.   Rice