Fast estimation of time-varying infectious disease transmission rates

tsiR: An R package for time-series Susceptible-Infected-Recovered models of epidemics

(2017) Alexander D. Becker et al.   PLoS One

The cohort effect in childhood disease dynamics

(2016) Daihai He et al.   Journal of the Royal Society Interface

Reconstruction of disease transmission rates: Applications to measles, dengue, and influenza

(2016) Alexander Lange   JOURNAL OF THEORETICAL BIOLOGY

A century of transitions in New York City's measles dynamics

(2015) K. Hempel et al.   Journal of the Royal Society Interface

Intrinsic and realized generation intervals in infectious-disease transmission

(2015) David Champredon et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Effects of the infectious period distribution on predicted transitions in childhood disease dynamics

(2013) O. Krylova et al.   Journal of the Royal Society Interface

Extracting the time-dependent transmission rate from infection data via solution of an inverse ODE problem

(2012) Mark Pollicott et al.   Journal of Biological Dynamics

Herald waves of cholera in nineteenth century London

(2010) J. H. Tien et al.   Journal of the Royal Society Interface

Parameterizing state-space models for infectious disease dynamics by generalized profiling: measles in Ontario

(2010) G. Hooker et al.   Journal of the Royal Society Interface

Plug-and-play inference for disease dynamics: measles in large and small populations as a case study

(2009) D. He et al.   Journal of the Royal Society Interface

Reconstructing influenza incidence by deconvolution of daily mortality time series

(2009) E. Goldstein et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Absolute humidity modulates influenza survival, transmission, and seasonality

(2009) J. Shaman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Likelihood-based estimation of continuous-time epidemic models from time-series data: application to measles transmission in London

(2008) S. Cauchemez et al.   Journal of the Royal Society Interface