TumorTracer: a method to identify the tissue of origin from the somatic mutations of a tumor specimen
BMC MEDICAL GENOMICS (2015)
期刊
BMC MEDICAL GENOMICS
卷 8, 期 -, 页码 -出版社
BMC
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资金
- European Commission 7th Framework Programme [HEALTH-2010-F2-259303]
- Danish Council for Independent Research [09-073053/FSS]
- Breast Cancer Research Foundation
- Villum Kann Rasmussen Foundation
- Danish Cancer Society
- Novo Nordisk Foundation
- Cancer Research UK [19310, 17786] Funding Source: researchfish
- Novo Nordisk Fonden [NNF14OC0009569] Funding Source: researchfish
- Rosetrees Trust [M179] Funding Source: researchfish
- The Danish Cancer Society [R72-A4618, R90-A6213] Funding Source: researchfish
- The Francis Crick Institute [10174, 10169, 10170, 10359, 10172, 10303] Funding Source: researchfish
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Takahiro Karasaki, David A. Moore, Selvaraju Veeriah, Cristina Naceur-Lombardelli, Antonia Toncheva, Neil Magno, Sophia Ward, Maise Al Bakir, Thomas B. K. Watkins, Kristiana Grigoriadis, Ariana Huebner, Mark S. Hill, Alexander M. Frankell, Christopher Abbosh, Clare Puttick, Haoran Zhai, Francisco Gimeno-Valiente, Sadegh Saghafinia, Nnennaya Kanu, Michelle Dietzen, Oriol Pich, Emilia L. Lim, Carlos Martinez-Ruiz, James R. M. Black, Dhruva Biswas, Brittany B. Campbell, Claudia Lee, Emma Colliver, Katey S. S. Enfield, Sonya Hessey, Crispin T. Hiley, Simone Zaccaria, Kevin Litchfield, Nicolai J. Birkbak, Elizabeth Larose Cadieux, Jonas Demeulemeester, Peter Van Loo, Prasad R. Adusumilli, Kay See Tan, Waseem Cheema, Francisco Sanchez-Vega, David R. Jones, Natasha Rekhtman, William D. Travis, Allan Hackshaw, Teresa Marafioti, Roberto Salgado, John Le Quesne, Andrew G. Nicholson, Nicholas McGranahan, Charles Swanton, Mariam Jamal-Hanjani, Jason F. Lester, Amrita Bajaj, Apostolos Nakas, Azmina Sodha-Ramdeen, Keng Ang, Mohamad Tufail, Mohammed Fiyaz Chowdhry, Molly Scotland, Rebecca Boyles, Sridhar Rathinam, Claire Wilson, Domenic Marrone, Sean Dulloo, Dean A. Fennell, Gurdeep Matharu, Jacqui A. Shaw, Joan Riley, Lindsay Primrose, Ekaterini Boleti, Heather Cheyne, Mohammed Khalil, Shirley Richardson, Tracey Cruickshank, Gillian Price, Keith M. Kerr, Sarah Benafif, Kayleigh Gilbert, Babu Naidu, Akshay J. Patel, Aya Osman, Christer Lacson, Gerald Langman, Helen Shackleford, Madava Djearaman, Salma Kadiri, Gary Middleton, Angela Leek, Jack Davies Hodgkinson, Nicola Totten, Angeles Montero, Elaine Smith, Eustace Fontaine, Felice Granato, Helen Doran, Juliette Novasio, Kendadai Rammohan, Leena Joseph, Paul Bishop, Rajesh Shah, Stuart Moss, Vijay Joshi, Philip Crosbie, Fabio Gomes, Kate Brown, Mathew Carter, Anshuman Chaturvedi, Lynsey Priest, Pedro Oliveira, Colin R. Lindsay, Fiona H. Blackhall, Matthew G. Krebs, Yvonne Summers, Alexandra Clipson, Jonathan Tugwood, Alastair Kerr, Dominic G. Rothwell, Elaine Kilgour, Caroline Dive, Hugo J. W. L. Aerts, Roland F. Schwarz, Tom L. Kaufmann, Gareth A. Wilson, Rachel Rosenthal, Zoltan Szallasi, Judit Kisistok, Mateo Sokac, Miklos Diossy, Abigail Bunkum, Aengus Stewart, Alastair Magness, Andrew Rowan, Angeliki Karamani, Benny Chain, Carla Castignani, Chris Bailey, Clare E. Weeden, Corentin Richard, David R. Pearce, Despoina Karagianni, Dina Levi, Elena Hoxha, Emma Nye, Eva Gronroos, Felip Galvez-Cancino, Foteini Athanasopoulou, George Kassiotis, Georgia Stavrou, Gerasimos Mastrokalos, Helen L. Lowe, Ignacio Garcia Matos, Jacki Goldman, James L. Reading, Javier Herrero, Jayant K. Rane, Jerome Nicod, Jie Min Lam, John A. Hartley, Karl S. Peggs, Kayalvizhi Selvaraju, Kerstin Thol, Kevin W. Ng, Kezhong Chen, Krijn Dijkstra, Krupa Thakkar, Leah Ensell, Mansi Shah, Marcos Vasquez Duran, Maria Litovchenko, Mariana Werner Sunderland, Michelle Leung, Mickael Escudero, Mihaela Angelova, Miljana Tanic, Monica Sivakumar, Olga Chervova, Olivia Lucas, Othman Al-Sawaf, Paulina Prymas, Philip Hobson, Piotr Pawlik, Richard Kevin Stone, Robert Bentham, Robert E. Hynds, Roberto Vendramin, Saioa Lopez, Samuel Gamble, Seng Kuong Anakin Ung, Sergio A. Quezada, Sharon Vanloo, Stefan Boeing, Stephan Beck, Supreet Kaur Bola, Tamara Denner, Thanos P. Mourikis, Victoria Spanswick, Vittorio Barbe, Wei-Ting Lu, William Hill, Wing Kin Liu, Yin Wu, Yutaka Naito, Zoe Ramsden, Catarina Veiga, Gary Royle, Charles-Antoine Collins-Fekete, Francesco Fraioli, Paul Ashford, Tristan Clark, Martin D. Forster, Siow Ming Lee, Elaine Borg, Mary Falzon, Dionysis Papadatos-Pastos, James Wilson, Tanya Ahmad, Alexander James Procter, Asia Ahmed, Magali N. Taylor, Arjun Nair, David Lawrence, Davide Patrini, Neal Navani, Ricky M. Thakrar, Sam M. Janes, Emilie Martinoni Hoogenboom, Fleur Monk, James W. Holding, Junaid Choudhary, Kunal Bhakhri, Marco Scarci, Martin Hayward, Nikolaos Panagiotopoulos, Pat Gorman, Reena Khiroya, Robert C. M. Stephens, Yien Ning Sophia Wong, Steve Bandula, Abigail Sharp, Sean Smith, Nicole Gower, Harjot Kaur Dhanda, Kitty Chan, Camilla Pilotti, Rachel Leslie, Anca Grapa, Hanyun Zhang, Khalid AbdulJabbar, Xiaoxi Pan, Yinyin Yuan, David Chuter, Mairead MacKenzie, Serena Chee, Aiman Alzetani, Judith Cave, Lydia Scarlett, Jennifer Richards, Papawadee Ingram, Silvia Austin, Eric Lim, Paulo De Sousa, Simon Jordan, Alexandra Rice, Hilgardt Raubenheimer, Harshil Bhayani, Lyn Ambrose, Anand Devaraj, Hema Chavan, Sofina Begum, Silviu Buderi, Daniel Kaniu, Mpho Malima, Sarah Booth, Nadia Fernandes, Pratibha Shah, Chiara Proli, Madeleine Hewish, Sarah Danson, Michael J. Shackcloth, Lily Robinson, Peter Russell, Kevin G. Blyth, Craig Dick, Alan Kirk, Mo Asif, Rocco Bilancia, Nikos Kostoulas, Mathew Thomas
NATURE MEDICINE (2023)
An online atlas of human plasma metabolite signatures of gut microbiome composition (vol 13, 5370, 2022)
Koen F. F. Dekkers, Sergi Sayols-Baixeras, Gabriel Baldanzi, Christoph Nowak, Ulf Hammar, Diem Nguyen, Georgios Varotsis, Louise Brunkwall, Nynne Nielsen, Aron C. C. Eklund, Jacob Bak Holm, H. Bjorn Nielsen, Filip Ottosson, Yi-Ting Lin, Shafqat Ahmad, Lars Lind, Johan Sundstrom, Gunnar Engstroem, J. Gustav Smith, Johan aernlov, Marju Orho-Melander, Tove Fall
NATURE COMMUNICATIONS (2023)
Impact of Whole Genome Doubling on Detection of Circulating Tumor DNA in Colorectal Cancer
Jonas Kabel, Tenna Vesterman Henriksen, Christina Demuth, Amanda Frydendahl, Mads Heilskov Rasmussen, Jesper Nors, Nicolai J. Birkbak, Anders Husted Madsen, Uffe S. Love, Per Vadgaard Andersen, Thomas Kolbro, Alessio Monti, Ole Thorlacius-Ussing, Mikail Gogenur, Jeppe Kildsig, Nis Hallundbaek Schlesinger, Peter Bondeven, Lene Hjerrild Iversen, Kare Andersson Gotschalck, Claus Lindbjerg Andersen
CANCERS (2023)
Genetic analysis of blood molecular phenotypes reveals common properties in the regulatory networks affecting complex traits
Andrew A. Brown, Juan A. Fernandez-Tajes, Mun-gwan W. Hong, Caroline A. Brorsson, Robert W. Koivula, David Davtian, Theo Dupuis, Ambra M. Sartori, Theodora-Dafni Michalettou, Ian H. Forgie, Jonathan Adam, Kristine Allin, Robert Caiazzo, Henna Cederberg, Federico N. De Masi, Petra J. M. Elders, Giuseppe Giordano, Mark Haid, Torben Hansen, Tue H. Hansen, Andrew T. Hattersley, Alison G. Heggie, Cedric Howald, Angus G. Jones, Tarja Kokkola, Markku Laakso, Anubha Mahajan, Andrea Mari, Timothy J. McDonald, Donna McEvoy, Miranda Mourby, Petra B. Musholt, Birgitte Nilsson, Francois Pattou, Deborah Penet, Violeta Raverdy, Martin Ridderstrale, Luciana Romano, Femke Rutters, Sapna Sharma, Harriet D. Teare, Leen 't Hart, Konstantinos D. Tsirigos, Jagadish Vangipurapu, Henrik Vestergaard, Soren Brunak, Paul Franks, Gary Frost, Harald I. Grallert, Bernd Jablonka, Mark McCarthy, Imre Pavo, Oluf Pedersen, Hartmut Ruetten, Mark Walker, Jerzy Adamski, Jochen M. Schwenk, Ewan R. Pearson, Emmanouil T. Dermitzakis, Ana Vinuela, Kofi Adragni, Rosa Lundbye L. A. Allesoe, Anna Artati, Manimozhiyan Arumugam, Naeimeh Atabaki-Pasdar, Tania Baltauss, Karina Banasik, Anna L. Barnett, Patrick Baum, Jimmy D. Bell, Joline B. Beulens, Susanna Bianzano, Roberto Bizzotto, Amelie Bonnefond, Louise Cabrelli, Matilda Dale, Adem Y. Dawed, Nathalie de Preville, Koen F. Dekkers, Harshal A. Deshmukh, Christiane Dings, Louise Donnelly, Avirup Dutta, Beate Ehrhardt, Line Engelbrechtsen, Rebeca Eriksen, Yong Fan, Jorge Ferrer, Hugo Fitipaldi, Annemette Forman, Andreas Fritsche, Philippe Froguel, Johann Gassenhuber, Stephen Gough, Ulrike Graefe-Mody, Rolf Grempler, Lenka Groeneveld, Leif Groop, Valborg Gudmundsdottir, Ramneek Gupta, Anita M. H. Hennige, Anita V. Hill, Reinhard W. Holl, Michelle Hudson, Ulrik Plesner Jacobsen, Christopher Jennison, Joachim Johansen, Anna Jonsson, Tugce Karaderi, Jane Kaye, Gwen Kennedy, Maria Klintenberg, Teemu Kuulasmaa, Thorsten Lehr, Heather Loftus, Agnete Troen T. Lundgaard, Gianluca Mazzoni, Nicky McRobert, Ian McVittie, Rachel Nice, Claudia Nicolay, Giel N. Nijpels, Colin K. Palmer, Helle H. Pedersen, Mandy H. Perry, Hugo Pomares-Millan, Cornelia P. Prehn, Anna Ramisch, Simon Rasmussen, Neil Robertson, Marianne Rodriquez, Peter Sackett, Nina Scherer, Nisha Shah, Iryna Sihinevich, Roderick C. Slieker, Nadja B. Sondertoft, Birgit Steckel-Hamann, Melissa K. Thomas, Cecilia Engel E. Thomas, Elizabeth Louise L. Thomas, Barbara Thorand, Claire E. Thorne, Joachim Tillner, Andrea Tura, Mathias Uhlen, Nienke van Leeuwen, Sabine van Oort, Helene Verkindt, Josef Vogt, Peter W. Wad Sackett, Agata Wesolowska-Andersen, Brandon Whitcher, Margaret W. White
NATURE COMMUNICATIONS (2023)
Quantifying the impact of immunotherapy on RNA dynamics in cancer
Ieva Usaite, Dhruva Biswas, Krijn Dijkstra, Thomas B. K. Watkins, Oriol Pich, Clare Puttick, Mihaela Angelova, Krupa Thakkar, Crispin Hiley, Nicolai Birkbak, Marleen Kok, Simone Zaccaria, Yin Wu, Kevin Litchfield, Charles Swanton, Nnennaya Kanu
JOURNAL FOR IMMUNOTHERAPY OF CANCER (2023)
CONIPHER: a computational framework for scalable phylogenetic reconstruction with error correction
Kristiana Grigoriadis, Ariana Huebner, Abigail Bunkum, Emma Colliver, Alexander M. Frankell, Mark S. Hill, Kerstin Thol, Nicolai J. Birkbak, Charles Swanton, Simone Zaccaria, Nicholas Mcgranahan
NATURE PROTOCOLS (2023)
APOBEC3 as a driver of genetic intratumor heterogeneity
Subramanian Venkatesan, Mihaela Angelova, Jirina Bartkova, Samuel F. Bakhoum, Jiri Bartek, Nnennaya Kanu, Charles Swanton
MOLECULAR & CELLULAR ONCOLOGY (2023)