Transcription factor expression defines subclasses of developing projection neurons highly similar to single-cell RNA-seq subtypes
出版年份 2020 全文链接
标题
Transcription factor expression defines subclasses of developing projection neurons highly similar to single-cell RNA-seq subtypes
作者
关键词
-
出版物
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
Volume 117, Issue 40, Pages 25074-25084
出版商
Proceedings of the National Academy of Sciences
发表日期
2020-09-19
DOI
10.1073/pnas.2008013117
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- A Translaminar Genetic Logic for the Circuit Identity of Intracortically Projecting Neurons
- (2019) Esther Klingler et al. CURRENT BIOLOGY
- Single-cell transcriptomic analysis of mouse neocortical development
- (2019) Lipin Loo et al. Nature Communications
- Temporal patterning of apical progenitors and their daughter neurons in the developing neocortex
- (2019) L. Telley et al. SCIENCE
- The art of using t-SNE for single-cell transcriptomics
- (2019) Dmitry Kobak et al. Nature Communications
- TBR2 antagonizes retinoic acid dependent neuronal differentiation by repressing Zfp423 during corticogenesis
- (2018) Luca Massimino et al. DEVELOPMENTAL BIOLOGY
- The Epigenetic State of PRDM16-Regulated Enhancers in Radial Glia Controls Cortical Neuron Position
- (2018) José-Manuel Baizabal et al. NEURON
- Single-cell profiling of the developing mouse brain and spinal cord with split-pool barcoding
- (2018) Alexander B. Rosenberg et al. SCIENCE
- Shared and distinct transcriptomic cell types across neocortical areas
- (2018) Bosiljka Tasic et al. NATURE
- Dimensionality reduction for visualizing single-cell data using UMAP
- (2018) Etienne Becht et al. NATURE BIOTECHNOLOGY
- Single-nucleus and single-cell transcriptomes compared in matched cortical cell types
- (2018) Trygve E. Bakken et al. PLoS One
- Myt1l safeguards neuronal identity by actively repressing many non-neuronal fates
- (2017) Moritz Mall et al. NATURE
- Differential analysis of RNA-seq incorporating quantification uncertainty
- (2017) Harold Pimentel et al. NATURE METHODS
- Neuronal cell-type classification: challenges, opportunities and the path forward
- (2017) Hongkui Zeng et al. NATURE REVIEWS NEUROSCIENCE
- Layer-specific chromatin accessibility landscapes reveal regulatory networks in adult mouse visual cortex
- (2017) Lucas T Gray et al. eLife
- Subtype-Specific Genes that Characterize Subpopulations of Callosal Projection Neurons in Mouse Identify Molecularly Homologous Populations in Macaque Cortex
- (2016) Ryann M. Fame et al. CEREBRAL CORTEX
- TBR1 regulates autism risk genes in the developing neocortex
- (2016) James H. Notwell et al. GENOME RESEARCH
- Unlinking an lncRNA from Its Associated cis Element
- (2016) Vikram R. Paralkar et al. MOLECULAR CELL
- A comprehensive transcriptional map of primate brain development
- (2016) Trygve E. Bakken et al. NATURE
- Local regulation of gene expression by lncRNA promoters, transcription and splicing
- (2016) Jesse M. Engreitz et al. NATURE
- Near-optimal probabilistic RNA-seq quantification
- (2016) Nicolas L Bray et al. NATURE BIOTECHNOLOGY
- Adult mouse cortical cell taxonomy revealed by single cell transcriptomics
- (2016) Bosiljka Tasic et al. NATURE NEUROSCIENCE
- Sequential transcriptional waves direct the differentiation of newborn neurons in the mouse neocortex
- (2016) L. Telley et al. SCIENCE
- Alternative promoters of Peg3 with maternal specificity
- (2016) Bambarendage P. U. Perera et al. Scientific Reports
- MyT1 Counteracts the Neural Progenitor Program to Promote Vertebrate Neurogenesis
- (2016) Francisca F. Vasconcelos et al. Cell Reports
- Opposing Roles for the lncRNA Haunt and Its Genomic Locus in Regulating HOXA Gene Activation during Embryonic Stem Cell Differentiation
- (2015) Yafei Yin et al. Cell Stem Cell
- Widespread Differential Expression of Coding Region and 3′ UTR Sequences in Neurons and Other Tissues
- (2015) Arif Kocabas et al. NEURON
- Cux2-Positive Radial Glial Cells Generate Diverse Subtypes of Neocortical Projection Neurons and Macroglia
- (2015) Matthew J. Eckler et al. NEURON
- DeCoN: Genome-wide Analysis of In Vivo Transcriptional Dynamics during Pyramidal Neuron Fate Selection in Neocortex
- (2015) Bradley J. Molyneaux et al. NEURON
- Sip1 Downstream Effector ninein Controls Neocortical Axonal Growth, Ipsilateral Branching, and Microtubule Growth and Stability
- (2015) Swathi Srivatsa et al. NEURON
- Spatiotemporal expression and transcriptional perturbations by long noncoding RNAs in the mouse brain
- (2015) Loyal A. Goff et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- FactoMineR: AnRPackage for Multivariate Analysis
- (2015) Sébastien Lê et al. Journal of Statistical Software
- Bidirectional promoters are the major source of gene activation-associated non-coding RNAs in mammals
- (2014) Masahiro Uesaka et al. BMC GENOMICS
- Satb2 Regulates the Differentiation of Both Callosal and Subcerebral Projection Neurons in the Developing Cerebral Cortex
- (2014) Dino P. Leone et al. CEREBRAL CORTEX
- Transcriptional landscape of the prenatal human brain
- (2014) Jeremy A. Miller et al. NATURE
- Gene co-regulation by Fezf2 selects neurotransmitter identity and connectivity of corticospinal neurons
- (2014) Simona Lodato et al. NATURE NEUROSCIENCE
- STRING v10: protein–protein interaction networks, integrated over the tree of life
- (2014) Damian Szklarczyk et al. NUCLEIC ACIDS RESEARCH
- Considerations when investigating lncRNA function in vivo
- (2014) Andrew R Bassett et al. eLife
- A multi-resource data integration approach: identification of candidate genes regulating cell proliferation during neocortical development
- (2014) Cynthia M. Vied et al. Frontiers in Neuroscience
- Transcriptome sequencing during mouse brain development identifies long non-coding RNAs functionally involved in neurogenic commitment
- (2013) Julieta Aprea et al. EMBO JOURNAL
- Direct lineage reprogramming of post-mitotic callosal neurons into corticofugal neurons in vivo
- (2013) Caroline Rouaux et al. NATURE CELL BIOLOGY
- Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position
- (2013) Jason D Buenrostro et al. NATURE METHODS
- Molecular logic of neocortical projection neuron specification, development and diversity
- (2013) Luciano Custo Greig et al. NATURE REVIEWS NEUROSCIENCE
- The Enhancer Landscape during Early Neocortical Development Reveals Patterns of Dense Regulation and Co-option
- (2013) Aaron M. Wenger et al. PLoS Genetics
- Long Noncoding RNA MALAT1 Controls Cell Cycle Progression by Regulating the Expression of Oncogenic Transcription Factor B-MYB
- (2013) Vidisha Tripathi et al. PLoS Genetics
- Multiple knockout mouse models reveal lincRNAs are required for life and brain development
- (2013) Martin Sauvageau et al. eLife
- Transcriptional co-regulation of neuronal migration and laminar identity in the neocortex
- (2012) K. Y. Kwan et al. DEVELOPMENT
- Developmental dynamics of PAFAH1B subunits during mouse brain development
- (2012) Teresa Escamez et al. JOURNAL OF COMPARATIVE NEUROLOGY
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- Cis-acting noncoding RNAs: friends and foes
- (2012) Sònia Guil et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Fate-Restricted Neural Progenitors in the Mammalian Cerebral Cortex
- (2012) S. J. Franco et al. SCIENCE
- Multiobjective evolutionary algorithms to identify highly autocorrelated areas: the case of spatial distribution in financially compromised farms
- (2011) Carlos R. García-Alonso et al. ANNALS OF OPERATIONS RESEARCH
- SAM68 Regulates Neuronal Activity-Dependent Alternative Splicing of Neurexin-1
- (2011) Takatoshi Iijima et al. CELL
- Tbr1 and Fezf2 Regulate Alternate Corticofugal Neuronal Identities during Neocortical Development
- (2011) W. L. McKenna et al. JOURNAL OF NEUROSCIENCE
- Intrinsic transition of embryonic stem-cell differentiation into neural progenitors
- (2011) Daisuke Kamiya et al. NATURE
- TBR1 directly represses Fezf2 to control the laminar origin and development of the corticospinal tract
- (2011) W. Han et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Functional consequences of bidirectional promoters
- (2011) Wu Wei et al. TRENDS IN GENETICS
- GREAT improves functional interpretation of cis-regulatory regions
- (2010) Cory Y McLean et al. NATURE BIOTECHNOLOGY
- Tbr1 regulates regional and laminar identity of postmitotic neurons in developing neocortex
- (2010) F. Bedogni et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Exhaustive Search for Over-represented DNA Sequence Motifs with CisFinder
- (2009) A. A. Sharov et al. DNA RESEARCH
- Discovery of Regulatory Elements is Improved by a Discriminatory Approach
- (2009) Eivind Valen et al. PLoS Computational Biology
- The Hippo–YAP pathway: new connections between regulation of organ size and cancer
- (2008) Bin Zhao et al. CURRENT OPINION IN CELL BIOLOGY
- The determination of projection neuron identity in the developing cerebral cortex
- (2008) Dino P Leone et al. CURRENT OPINION IN NEUROBIOLOGY
- BHLHB2 Controls Bdnf Promoter 4 Activity and Neuronal Excitability
- (2008) X. Jiang et al. JOURNAL OF NEUROSCIENCE
- A Novel Purification Method for CNS Projection Neurons Leads to the Identification of Brain Vascular Cells as a Source of Trophic Support for Corticospinal Motor Neurons
- (2008) J. C. Dugas et al. JOURNAL OF NEUROSCIENCE
- Satb2 Is a Postmitotic Determinant for Upper-Layer Neuron Specification in the Neocortex
- (2008) Olga Britanova et al. NEURON
- Satb2 Regulates Callosal Projection Neuron Identity in the Developing Cerebral Cortex
- (2008) Elizabeth A. Alcamo et al. NEURON
- The Air Noncoding RNA Epigenetically Silences Transcription by Targeting G9a to Chromatin
- (2008) T. Nagano et al. SCIENCE
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now