An enumerative algorithm for de novo design of proteins with diverse pocket structures
出版年份 2020 全文链接
标题
An enumerative algorithm for de novo design of proteins with diverse pocket structures
作者
关键词
-
出版物
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
Volume 117, Issue 36, Pages 22135-22145
出版商
Proceedings of the National Academy of Sciences
发表日期
2020-08-25
DOI
10.1073/pnas.2005412117
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Macromolecular modeling and design in Rosetta: recent methods and frameworks
- (2020) Julia Koehler Leman et al. NATURE METHODS
- Designing protein structures and complexes with the molecular modeling program Rosetta
- (2019) Brian Kuhlman JOURNAL OF BIOLOGICAL CHEMISTRY
- Essentials of de novo protein design: Methods and applications
- (2018) Enrique Marcos et al. Wiley Interdisciplinary Reviews-Computational Molecular Science
- De novo design of a fluorescence-activating β-barrel
- (2018) Jiayi Dou et al. NATURE
- Design of metalloproteins and novel protein folds using variational autoencoders
- (2018) Joe G. Greener et al. Scientific Reports
- Massively parallel de novo protein design for targeted therapeutics
- (2017) Aaron Chevalier et al. NATURE
- Sampling and energy evaluation challenges in ligand binding protein design
- (2017) Jiayi Dou et al. PROTEIN SCIENCE
- Principles for designing proteins with cavities formed by curved β sheets
- (2017) Enrique Marcos et al. SCIENCE
- Global analysis of protein folding using massively parallel design, synthesis, and testing
- (2017) Gabriel J. Rocklin et al. SCIENCE
- The coming of age of de novo protein design
- (2016) Po-Ssu Huang et al. NATURE
- Design of structurally distinct proteins using strategies inspired by evolution
- (2016) T. M. Jacobs et al. SCIENCE
- De novo protein design: how do we expand into the universe of possible protein structures?
- (2015) Derek N Woolfson et al. CURRENT OPINION IN STRUCTURAL BIOLOGY
- Exploring the repeat protein universe through computational protein design
- (2015) TJ Brunette et al. NATURE
- Multiplex pairwise assembly of array-derived DNA oligonucleotides
- (2015) Jason C. Klein et al. NUCLEIC ACIDS RESEARCH
- Control over overall shape and size in de novo designed proteins
- (2015) Yu-Ru Lin et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- An amino acid code to define a protein's tertiary packing surface
- (2015) Keith J. Fraga et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- The origin of β-strand bending in globular proteins
- (2015) Kazuo Fujiwara et al. BMC STRUCTURAL BIOLOGY
- Active Site Plasticity of a Computationally Designed Retro-Aldolase Enzyme
- (2014) Richard Obexer et al. ChemCatChem
- Filling out the structural map of the NTF2-like superfamily
- (2013) Ruth Y Eberhardt et al. BMC BIOINFORMATICS
- Computational design of ligand-binding proteins with high affinity and selectivity
- (2013) Christine E. Tinberg et al. NATURE
- SCOPe: Structural Classification of Proteins—extended, integrating SCOP and ASTRAL data and classification of new structures
- (2013) Naomi K. Fox et al. NUCLEIC ACIDS RESEARCH
- Computational Design of Catalytic Dyads and Oxyanion Holes for Ester Hydrolysis
- (2012) Florian Richter et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Principles for designing ideal protein structures
- (2012) Nobuyasu Koga et al. NATURE
- De Novo Enzyme Design Using Rosetta3
- (2011) Florian Richter et al. PLoS One
- RosettaRemodel: A Generalized Framework for Flexible Backbone Protein Design
- (2011) Po-Ssu Huang et al. PLoS One
- PHENIX: a comprehensive Python-based system for macromolecular structure solution
- (2010) Paul D. Adams et al. ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY
- NWChem: A comprehensive and scalable open-source solution for large scale molecular simulations
- (2010) M. Valiev et al. COMPUTER PHYSICS COMMUNICATIONS
- A practical generative design method
- (2010) Sivam Krish COMPUTER-AIDED DESIGN
- Protein Pockets: Inventory, Shape, and Comparison
- (2010) Ryan G. Coleman et al. Journal of Chemical Information and Modeling
- Probing Designability via a Generalized Model of Helical Bundle Geometry
- (2010) Gevorg Grigoryan et al. JOURNAL OF MOLECULAR BIOLOGY
- Protein structure prediction: when is it useful?
- (2009) Yang Zhang CURRENT OPINION IN STRUCTURAL BIOLOGY
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreAdd your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload Now