GESS: a database of global evaluation of SARS-CoV-2/hCoV-19 sequences

A new coronavirus associated with human respiratory disease in China

(2020) Fan Wu et al.   NATURE

A pneumonia outbreak associated with a new coronavirus of probable bat origin

(2020) Peng Zhou et al.   NATURE

On the origin and continuing evolution of SARS-CoV-2

(2020) Xiaolu Tang et al.   National Science Review

Evolutionary analysis of SARS-CoV-2: how mutation of Non-Structural Protein 6 (NSP6) could affect viral autophagy

(2020) Domenico Benvenuto et al.   JOURNAL OF INFECTION

Sampling bias and incorrect rooting make phylogenetic network tracing of SARS-COV-2 infections unreliable

(2020) Carla Mavian et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Median-joining network analysis of SARS-CoV-2 genomes is neither phylogenetic nor evolutionary

(2020) Santiago J. Sánchez-Pacheco et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Phylogenetic network analysis of SARS-CoV-2 genomes

(2020) Peter Forster et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Two linear epitopes on the SARS-CoV-2 spike protein that elicit neutralising antibodies in COVID-19 patients

(2020) Chek Meng Poh et al.   Nature Communications

A Novel Synonymous Mutation of SARS-CoV-2: Is This Possible to Affect Their Antigenicity and Immunogenicity?

(2020) Sung-Jae Kim et al.   Vaccines

Tracking Changes in SARS-CoV-2 Spike: Evidence that D614G Increases Infectivity of the COVID-19 Virus

(2020) Bette Korber et al.   CELL

Immunoinformatics study to search epitopes of spike glycoprotein from SARS-CoV-2 as potential vaccine

(2020) Ramírez-Salinas Gema Lizbeth et al.   JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS

Designing a multi-epitope vaccine against SARS-CoV-2: an immunoinformatics approach

(2020) Abdus Samad et al.   JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS

Immunogenicity and safety of a recombinant adenovirus type-5-vectored COVID-19 vaccine in healthy adults aged 18 years or older: a randomised, double-blind, placebo-controlled, phase 2 trial

(2020) Feng-Cai Zhu et al.   LANCET

SARS-CoV-2 mRNA vaccine design enabled by prototype pathogen preparedness

(2020) Kizzmekia S. Corbett et al.   NATURE

Epitope-based peptide vaccines predicted against novel coronavirus disease caused by SARS-CoV-2

(2020) Li Lin et al.   VIRUS RESEARCH

A candidate multi-epitope vaccine against SARS-CoV-2

(2020) Tamalika Kar et al.   Scientific Reports

A single dose of an adenovirus-vectored vaccine provides protection against SARS-CoV-2 challenge

(2020) Shipo Wu et al.   Nature Communications

Effects of life history and ecology on virus evolutionary potential

(2019) Paul J. Chisholm et al.   VIRUS RESEARCH

Minimap2: pairwise alignment for nucleotide sequences

(2018) Heng Li   BIOINFORMATICS

Nextstrain: real-time tracking of pathogen evolution

(2018) James Hadfield et al.   BIOINFORMATICS

GISAID: Global initiative on sharing all influenza data – from vision to reality

(2017) Yuelong Shu et al.   Eurosurveillance

ViPR: an open bioinformatics database and analysis resource for virology research

(2011) Brett E. Pickett et al.   NUCLEIC ACIDS RESEARCH

ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data

(2010) K. Wang et al.   NUCLEIC ACIDS RESEARCH