4.4 Review

Oligomeric viral proteins: small in size, large in presence

出版社

TAYLOR & FRANCIS LTD
DOI: 10.1080/10409238.2016.1215406

关键词

Viral proteins; oligomeric states; multifunctional; HIV-1 Capsid; Ebolavirus VP40; Flavivirus NS1; HIV-1 Rev

资金

  1. NIH [P50GM082250]

向作者/读者索取更多资源

Viruses are obligate parasites that rely heavily on host cellular processes for replication. The small number of proteins typically encoded by a virus is faced with selection pressures that lead to the evolution of distinctive structural properties, allowing each protein to maintain its function under constraints such as small genome size, high mutation rate, and rapidly changing fitness conditions. One common strategy for this evolution is to utilize small building blocks to generate protein oligomers that assemble in multiple ways, thereby diversifying protein function and regulation. In this review, we discuss specific cases that illustrate how oligomerization is used to generate a single defined functional state, to modulate activity via different oligomeric states, or to generate multiple functional forms via different oligomeric states.

作者

我是这篇论文的作者
点击您的名字以认领此论文并将其添加到您的个人资料中。

评论

主要评分

4.4
评分不足

次要评分

新颖性
-
重要性
-
科学严谨性
-
评价这篇论文

推荐

Article Biochemistry & Molecular Biology

Functional Segregation of Overlapping Genes in HIV

Jason D. Fernandes, Tyler B. Faust, Nicolas B. Strauli, Cynthia Smith, David C. Crosby, Robert L. Nakamura, Ryan D. Hernandez, Alan D. Frankel

Review Cell Biology

A structurally plastic ribonucleoprotein complex mediates post-transcriptional gene regulation in HIV-1

Jason D. Fernandes, David S. Booth, Alan D. Frankel

WILEY INTERDISCIPLINARY REVIEWS-RNA (2016)

Article Biochemical Research Methods

Purification and characterization of HIV-human protein complexes

Stefanie Jaeger, Natali Gulbahce, Peter Cimermancic, Joshua Kane, Nanhai He, Seemay Chou, Ivan D'Orso, Jason Fernandes, Gwendolyn Jang, Alan D. Frankel, Tom Alber, Qiang Zhou, Nevan J. Krogan

METHODS (2011)

Article Multidisciplinary Sciences

Global landscape of HIV-human protein complexes

Stefanie Jaeger, Peter Cimermancic, Natali Gulbahce, Jeffrey R. Johnson, Kathryn E. McGovern, Starlynn C. Clarke, Michael Shales, Gaelle Mercenne, Lars Pache, Kathy Li, Hilda Hernandez, Gwendolyn M. Jang, Shoshannah L. Roth, Eyal Akiva, John Marlett, Melanie Stephens, Ivan D'Orso, Jason Fernandes, Marie Fahey, Cathal Mahon, Anthony J. O'Donoghue, Aleksandar Todorovic, John H. Morris, David A. Maltby, Tom Alber, Gerard Cagney, Frederic D. Bushman, John A. Young, Sumit K. Chanda, Wesley I. Sundquist, Tanja Kortemme, Ryan D. Hernandez, Charles S. Craik, Alma Burlingame, Andrej Sali, Alan D. Frankel, Nevan J. Krogan

NATURE (2012)

Article Biochemistry & Molecular Biology

The HIV-1 Rev Response Element An RNA scaffold that directs the cooperative assembly of a homo-oligomeric ribonucleoprotein complex

Jason D. Fernandes, Bhargavi Jayaraman, Alan D. Frankel

RNA BIOLOGY (2012)

Article Multidisciplinary Sciences

Highly Mutable Linker Regions Regulate HIV-1 Rev Function and Stability

Bhargavi Jayaraman, Jason D. Fernandes, Shumin Yang, Cynthia Smith, Alan D. Frankel

SCIENTIFIC REPORTS (2019)

Article Multidisciplinary Sciences

Co-option of the lineage-specific LAVA retrotransposon in the gibbon genome

Mariam Okhovat, Kimberly A. Nevonen, Brett A. Davis, Pryce Michener, Samantha Ward, Mark Milhaven, Lana Harshman, Ajuni Sohota, Jason D. Fernandes, Sofie R. Salama, Rachel J. O'Neil, Nadav Ahituv, Krishna R. Veeramah, Lucia Carbone

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2020)

Article Biology

A survey-based analysis of the academic job market

Jason D. Fernandes, Sarvenaz Sarabipour, Christopher T. Smith, Natalie M. Niemi, Nafisa M. Jadavji, Ariangela J. Kozik, Alex S. Holehouse, Vikas Pejaver, Orsolya Symmons, Alexandre W. Bisson Filho, Amanda Haage

Article Genetics & Heredity

Stability of SARS-CoV-2 phylogenies

Yatish Turakhia, Nicola De Maio, Bryan Thornlow, Landen Gozashti, Robert Lanfear, Conor R. Walker, Angie S. Hinrichs, Jason D. Fernandes, Rui Borges, Greg Slodkowicz, Lukas Weilguny, David Haussler, Nick Goldman, Russell Corbett-Detig

PLOS GENETICS (2020)

Article Biology

Functional and structural segregation of overlapping helices in HIV-1

Maliheh Safari, Bhargavi Jayaraman, Shumin Yang, Cynthia Smith, Jason D. Fernandes, Alan D. Frankel, Karla Kirkegaard

Summary: Overlapping coding regions can balance selective forces between multiple genes, even when both protein products are structured over the same sequence. This study in HIV-1 found that even in an overlapped region, functional segregation occurs as each protein spaces its functional residues in a way that allows important functional residues to be encoded on a different helix.
Article Multidisciplinary Sciences

Sequence diversity analyses of an improved rhesus macaque genome enhance its biomedical utility

Wesley C. Warren, R. Alan Harris, Marina Haukness, Ian T. Fiddes, Shwetha C. Murali, Jason Fernandes, Philip C. Dishuck, Jessica M. Storer, Muthuswamy Raveendran, LaDeana W. Hillier, David Porubsky, Yafei Mao, David Gordon, Mitchell R. Vollger, Alexandra P. Lewis, Katherine M. Munson, Elizabeth DeVogelaere, Joel Armstrong, Mark Diekhans, Jerilyn A. Walker, Chad Tomlinson, Tina A. Graves-Lindsay, Milinn Kremitzki, Sofie R. Salama, Peter A. Audano, Merly Escalona, Nicholas W. Maurer, Francesca Antonacci, Ludovica Mercuri, Flavia A. M. Maggiolini, Claudia Rita Catacchio, Jason G. Underwood, David H. O'Connor, Ashley D. Sanders, Jan O. Korbel, Betsy Ferguson, H. Michael Kubisch, Louis Picker, Ned H. Kalin, Douglas Rosene, Jon Levine, David H. Abbott, Stanton B. Gray, Mar M. Sanchez, Zsofia A. Kovacs-Balint, Joseph W. Kemnitz, Sara M. Thomasy, Jeffrey A. Roberts, Erin L. Kinnally, John P. Capitanio, J. H. Pate Skene, Michael Platt, Shelley A. Cole, Richard E. Green, Mario Ventura, Roger W. Wiseman, Benedict Paten, Mark A. Batzer, Jeffrey Rogers, Evan E. Eichler

SCIENCE (2020)

Article Biotechnology & Applied Microbiology

Haplotype-aware diplotyping from noisy long reads

Jana Ebler, Marina Haukness, Trevor Pesout, Tobias Marschall, Benedict Paten

GENOME BIOLOGY (2019)

暂无数据