Challenges and future directions for representations of functional brain organization

Variability in the analysis of a single neuroimaging dataset by many teams

(2020) Rotem Botvinik-Nezer et al.   NATURE

Optimising network modelling methods for fMRI

(2020) Usama Pervaiz et al.   NEUROIMAGE

Resting-state “physiological networks”

(2020) Jingyuan E. Chen et al.   NEUROIMAGE

Modelling Subject Variability in the Spatial and Temporal Characteristics of Functional Modes

(2020) Samuel J. Harrison et al.   NEUROIMAGE

Evaluating the evidence for biotypes of depression: Methodological replication and extension of

(2019) Richard Dinga et al.   NeuroImage-Clinical

Benchmarking functional connectome-based predictive models for resting-state fMRI

(2019) Kamalaker Dadi et al.   NEUROIMAGE

The individual functional connectome is unique and stable over months to years

(2019) Corey Horien et al.   NEUROIMAGE

Large-scale intrinsic connectivity is consistent across varying task demands

(2019) Paulina Kieliba et al.   PLoS One

The relationship between spatial configuration and functional connectivity of brain regions revisited

(2019) Janine Diane Bijsterbosch et al.   eLife

Structural Variability in the Human Brain Reflects Fine-Grained Functional Architecture at the Population Level

(2019) Stephen Smith et al.   JOURNAL OF NEUROSCIENCE

The community structure of functional brain networks exhibits scale-specific patterns of inter- and intra-subject variability

(2019) Richard F. Betzel et al.   NEUROIMAGE

Inter-individual differences in human brain structure and morphology link to variation in demographics and behavior

(2019) Alberto Llera et al.   eLife

Towards a Universal Taxonomy of Macro-scale Functional Human Brain Networks

(2019) Lucina Q. Uddin et al.   BRAIN TOPOGRAPHY

Advancing functional connectivity research from association to causation

(2019) Andrew T. Reid et al.   NATURE NEUROSCIENCE

Trait-like variants in human functional brain networks

(2019) Benjamin A. Seitzman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Establishment of Best Practices for Evidence for Prediction

(2019) Russell A. Poldrack et al.   JAMA Psychiatry

A decade of test-retest reliability of functional connectivity: A systematic review and meta-analysis

(2019) Stephanie Noble et al.   NEUROIMAGE

There is no single functional atlas even for a single individual: Functional parcel definitions change with task

(2019) Mehraveh Salehi et al.   NEUROIMAGE

Spatial Topography of Individual-Specific Cortical Networks Predicts Human Cognition, Personality, and Emotion

(2018) Ru Kong et al.   CEREBRAL CORTEX

Statistical harmonization corrects site effects in functional connectivity measurements from multi-site fMRI data

(2018) Meichen Yu et al.   HUMAN BRAIN MAPPING

Intracranial Electrophysiology Reveals Reproducible Intrinsic Functional Connectivity within Human Brain Networks

(2018) Aaron Kucyi et al.   JOURNAL OF NEUROSCIENCE

Computational psychiatry: a report from the 2017 NIMH workshop on opportunities and challenges

(2018) Michele Ferrante et al.   MOLECULAR PSYCHIATRY

Disambiguating brain functional connectivity

(2018) Eugene P. Duff et al.   NEUROIMAGE

Directed functional connectivity using dynamic graphical models

(2018) Simon Schwab et al.   NEUROIMAGE

Human brain mapping: A systematic comparison of parcellation methods for the human cerebral cortex

(2018) Salim Arslan et al.   NEUROIMAGE

Topographic organization of the cerebral cortex and brain cartography

(2018) Simon B. Eickhoff et al.   NEUROIMAGE

Functional Brain Networks Are Dominated by Stable Group and Individual Factors, Not Cognitive or Daily Variation

(2018) Caterina Gratton et al.   NEURON

The impact of traditional neuroimaging methods on the spatial localization of cortical areas

(2018) Timothy S. Coalson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Large-Scale Gradients in Human Cortical Organization

(2018) Julia M. Huntenburg et al.   TRENDS IN COGNITIVE SCIENCES

A computational model of shared fine-scale structure in the human connectome

(2018) J. Swaroop Guntupalli et al.   PLoS Computational Biology

The relationship between spatial configuration and functional connectivity of brain regions

(2018) Janine Diane Bijsterbosch et al.   eLife

Spatial parcellations, spectral filtering, and connectivity measures in fMRI: Optimizing for discrimination

(2018) Roser Sala-Llonch et al.   HUMAN BRAIN MAPPING

Using temporal ICA to selectively remove global noise while preserving global signal in functional MRI data

(2018) Matthew F. Glasser et al.   NEUROIMAGE

Parcellating Cerebral Cortex: How Invasive Animal Studies Inform Noninvasive Mapmaking in Humans

(2018) David C. Van Essen et al.   NEURON

Spontaneous cortical activity transiently organises into frequency specific phase-coupling networks

(2018) Diego Vidaurre et al.   Nature Communications

fMRIPrep: a robust preprocessing pipeline for functional MRI

(2018) Oscar Esteban et al.   NATURE METHODS

Imaging-based parcellations of the human brain

(2018) Simon B. Eickhoff et al.   NATURE REVIEWS NEUROSCIENCE

Comparing brain graphs in which nodes are regions of interest or independent components: A simulation study

(2017) Qingbao Yu et al.   JOURNAL OF NEUROSCIENCE METHODS

Building better biomarkers: brain models in translational neuroimaging

(2017) Choong-Wan Woo et al.   NATURE NEUROSCIENCE

Magnetoencephalography for brain electrophysiology and imaging

(2017) Sylvain Baillet   NATURE NEUROSCIENCE

Scanning the horizon: towards transparent and reproducible neuroimaging research

(2017) Russell A. Poldrack et al.   NATURE REVIEWS NEUROSCIENCE

Investigations into within- and between-subject resting-state amplitude variations

(2017) Janine Bijsterbosch et al.   NEUROIMAGE

Dynamic effective connectivity in resting state fMRI

(2017) Hae-Jeong Park et al.   NEUROIMAGE

Benchmarking of participant-level confound regression strategies for the control of motion artifact in studies of functional connectivity

(2017) Rastko Ciric et al.   NEUROIMAGE

The dynamic functional connectome: State-of-the-art and perspectives

(2017) Maria Giulia Preti et al.   NEUROIMAGE

Deriving reproducible biomarkers from multi-site resting-state data: An Autism-based example

(2017) Alexandre Abraham et al.   NEUROIMAGE

Multi-scale brain networks

(2017) Richard F. Betzel et al.   NEUROIMAGE

Individual differences in functional connectivity during naturalistic viewing conditions

(2017) Tamara Vanderwal et al.   NEUROIMAGE

Towards a consensus regarding global signal regression for resting state functional connectivity MRI

(2017) Kevin Murphy et al.   NEUROIMAGE

Assessing and tuning brain decoders: Cross-validation, caveats, and guidelines

(2017) Gaël Varoquaux et al.   NEUROIMAGE

Sources and implications of whole-brain fMRI signals in humans

(2017) Jonathan D. Power et al.   NEUROIMAGE

Discovering dynamic brain networks from big data in rest and task

(2017) Diego Vidaurre et al.   NEUROIMAGE

Precision Functional Mapping of Individual Human Brains

(2017) Evan M. Gordon et al.   NEURON

Parallel Interdigitated Distributed Networks within the Individual Estimated by Intrinsic Functional Connectivity

(2017) Rodrigo M. Braga et al.   NEURON

On Global fMRI Signals and Simulations

(2017) Jonathan D. Power et al.   TRENDS IN COGNITIVE SCIENCES

Using Dual Regression to Investigate Network Shape and Amplitude in Functional Connectivity Analyses

(2017) Lisa D. Nickerson et al.   Frontiers in Neuroscience

A multi-modal parcellation of human cerebral cortex

(2016) Matthew F. Glasser et al.   NATURE

Multimodal population brain imaging in the UK Biobank prospective epidemiological study

(2016) Karla L Miller et al.   NATURE NEUROSCIENCE

Situating the default-mode network along a principal gradient of macroscale cortical organization

(2016) Daniel S. Margulies et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cluster failure: Why fMRI inferences for spatial extent have inflated false-positive rates

(2016) Anders Eklund et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Task-free MRI predicts individual differences in brain activity during task performance

(2016) I. Tavor et al.   SCIENCE

Connectivity-based parcellation: Critique and implications

(2015) Simon B. Eickhoff et al.   HUMAN BRAIN MAPPING

Cognitive Network Neuroscience

(2015) John D. Medaglia et al.   JOURNAL OF COGNITIVE NEUROSCIENCE

A positive-negative mode of population covariation links brain connectivity, demographics and behavior

(2015) Stephen M Smith et al.   NATURE NEUROSCIENCE

Functional connectome fingerprinting: identifying individuals using patterns of brain connectivity

(2015) Emily S Finn et al.   NATURE NEUROSCIENCE

Identifying Sparse Connectivity Patterns in the brain using resting-state fMRI

(2015) Harini Eavani et al.   NEUROIMAGE

Large-scale Probabilistic Functional Modes from resting state fMRI

(2015) Samuel J. Harrison et al.   NEUROIMAGE

Long-term neural and physiological phenotyping of a single human

(2015) Russell A. Poldrack et al.   Nature Communications

Oxygen Level and LFP in Task-Positive and Task-Negative Areas: Bridging BOLD fMRI and Electrophysiology

(2014) William J. Bentley et al.   CEREBRAL CORTEX

Generation and Evaluation of a Cortical Area Parcellation from Resting-State Correlations

(2014) Evan M. Gordon et al.   CEREBRAL CORTEX

MSM: A new flexible framework for Multimodal Surface Matching

(2014) Emma C. Robinson et al.   NEUROIMAGE

The topographic connectome

(2013) Saad Jbabdi et al.   CURRENT OPINION IN NEUROBIOLOGY

Detecting cell assemblies in large neuronal populations

(2013) Vítor Lopes-dos-Santos et al.   JOURNAL OF NEUROSCIENCE METHODS

From the connectome to brain function

(2013) Cornelia I Bargmann et al.   NATURE METHODS

Resting-state fMRI in the Human Connectome Project

(2013) Stephen M. Smith et al.   NEUROIMAGE

Dynamic functional connectivity: Promise, issues, and interpretations

(2013) R. Matthew Hutchison et al.   NEUROIMAGE

The nuisance of nuisance regression: Spectral misspecification in a common approach to resting-state fMRI preprocessing reintroduces noise and obscures functional connectivity

(2013) Michael N. Hallquist et al.   NEUROIMAGE

Resting state network estimation in individual subjects

(2013) Carl D. Hacker et al.   NEUROIMAGE

Groupwise whole-brain parcellation from resting-state fMRI data for network node identification

(2013) X. Shen et al.   NEUROIMAGE

The minimal preprocessing pipelines for the Human Connectome Project

(2013) Matthew F. Glasser et al.   NEUROIMAGE

Bayesian networks for fMRI: A primer

(2013) Jeanette A. Mumford et al.   NEUROIMAGE

Functional connectomics from resting-state fMRI

(2013) Stephen M. Smith et al.   TRENDS IN COGNITIVE SCIENCES

Tracking Whole-Brain Connectivity Dynamics in the Resting State

(2012) Elena A. Allen et al.   CEREBRAL CORTEX

A whole brain fMRI atlas generated via spatially constrained spectral clustering

(2011) R. Cameron Craddock et al.   HUMAN BRAIN MAPPING

The organization of the human cerebral cortex estimated by intrinsic functional connectivity

(2011) B. T. Thomas Yeo et al.   JOURNAL OF NEUROPHYSIOLOGY

Task-driven ICA feature generation for accurate and interpretable prediction using fMRI

(2011) Eugene P. Duff et al.   NEUROIMAGE

Capturing inter-subject variability with group independent component analysis of fMRI data: A simulation study

(2011) Elena A. Allen et al.   NEUROIMAGE

Multiband multislice GE-EPI at 7 tesla, with 16-fold acceleration using partial parallel imaging with application to high spatial and temporal whole-brain fMRI

(2010) Steen Moeller et al.   MAGNETIC RESONANCE IN MEDICINE

A Framework for Simulating and Estimating the State and Functional Topology of Complex Dynamic Geometric Networks

(2010) Marius Buibas et al.   NEURAL COMPUTATION

Spatiotemporal dynamics of low frequency BOLD fluctuations in rats and humans

(2010) Waqas Majeed et al.   NEUROIMAGE

Network modelling methods for FMRI

(2010) Stephen M. Smith et al.   NEUROIMAGE

Neural basis of global resting-state fMRI activity

(2010) M. L. Scholvinck et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Correspondence of the brain's functional architecture during activation and rest

(2009) S. M. Smith et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Neuronal correlates of spontaneous fluctuations in fMRI signals in monkey visual cortex: Implications for functional connectivity at rest

(2008) Amir Shmuel et al.   HUMAN BRAIN MAPPING

An improved approach to detection of amplitude of low-frequency fluctuation (ALFF) for resting-state fMRI: Fractional ALFF

(2008) Qi-Hong Zou et al.   JOURNAL OF NEUROSCIENCE METHODS

What we can do and what we cannot do with fMRI

(2008) Nikos K. Logothetis   NATURE

The Dynamic Brain: From Spiking Neurons to Neural Masses and Cortical Fields

(2008) Gustavo Deco et al.   PLoS Computational Biology