标题
Fast and comprehensive N- and O-glycoproteomics analysis with MSFragger-Glyco
作者
关键词
-
出版物
NATURE METHODS
Volume -, Issue -, Pages -
出版商
Springer Science and Business Media LLC
发表日期
2020-10-06
DOI
10.1038/s41592-020-0967-9
参考文献
相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。- Philosopher: a versatile toolkit for shotgun proteomics data analysis
- (2020) Felipe da Veiga Leprevost et al. NATURE METHODS
- Capturing site-specific heterogeneity with large-scale N-glycoproteome analysis
- (2019) Nicholas M. Riley et al. Nature Communications
- Recent Advances in Glycoproteomic Analysis by Mass Spectrometry
- (2019) Suttipong Suttapitugsakul et al. ANALYTICAL CHEMISTRY
- Why Glycosylation Matters in Building a Better Flu Vaccine
- (2019) Deborah Chang et al. MOLECULAR & CELLULAR PROTEOMICS
- Enhanced Global Post-translational Modification Discovery with MetaMorpheus
- (2018) Stefan K. Solntsev et al. JOURNAL OF PROTEOME RESEARCH
- Large-scale intact glycopeptide identification by Mascot database search
- (2018) Ravi Chand Bollineni et al. Scientific Reports
- PDV: an integrative proteomics data viewer
- (2018) Kai Li et al. BIOINFORMATICS
- The benefits of hybrid fragmentation methods for glycoproteomics
- (2018) Karli R. Reiding et al. TRAC-TRENDS IN ANALYTICAL CHEMISTRY
- Phosphopeptide Fragmentation and Site Localization by Mass Spectrometry: An Update
- (2018) Clement M. Potel et al. ANALYTICAL CHEMISTRY
- A Tandem Mass Spectrometry Sequence Database Search Method for Identification of O-Fucosylated Proteins by Mass Spectrometry
- (2018) Kristian E. Swearingen et al. JOURNAL OF PROTEOME RESEARCH
- Mapping the O‐glycoproteome using site‐specific extraction of O‐linked glycopeptides (EXoO)
- (2018) Weiming Yang et al. Molecular Systems Biology
- Comprehensive identification of peptides in tandem mass spectra using an efficient open search engine
- (2018) Hao Chi et al. NATURE BIOTECHNOLOGY
- The PRIDE database and related tools and resources in 2019: improving support for quantification data
- (2018) Yasset Perez-Riverol et al. NUCLEIC ACIDS RESEARCH
- MSFragger: ultrafast and comprehensive peptide identification in mass spectrometry–based proteomics
- (2017) Andy T Kong et al. NATURE METHODS
- pGlyco 2.0 enables precision N-glycoproteomics with comprehensive quality control and one-step mass spectrometry for intact glycopeptide identification
- (2017) Ming-Qi Liu et al. Nature Communications
- Use of a glycosylation site database to improve glycopeptide identification from complex mixtures
- (2016) Robert J. Chalkley et al. ANALYTICAL AND BIOANALYTICAL CHEMISTRY
- Automated Glycan Sequencing from Tandem Mass Spectra of N-Linked Glycopeptides
- (2016) Chuan-Yih Yu et al. ANALYTICAL CHEMISTRY
- Biological roles of glycans
- (2016) Ajit Varki GLYCOBIOLOGY
- Algorithms and design strategies towards automated glycoproteomics analysis
- (2016) Han Hu et al. MASS SPECTROMETRY REVIEWS
- Maturing Glycoproteomics Technologies Provide Unique Structural Insights into theN-glycoproteome and Its Regulation in Health and Disease
- (2016) Morten Thaysen-Andersen et al. MOLECULAR & CELLULAR PROTEOMICS
- The ProteomeXchange consortium in 2017: supporting the cultural change in proteomics public data deposition
- (2016) Eric W. Deutsch et al. NUCLEIC ACIDS RESEARCH
- A review of methods for interpretation of glycopeptide tandem mass spectral data
- (2015) Han Hu et al. GLYCOCONJUGATE JOURNAL
- Tissue-Specific Glycosylation at the Glycopeptide Level
- (2015) Katalin F. Medzihradszky et al. MOLECULAR & CELLULAR PROTEOMICS
- A mass-tolerant database search identifies a large proportion of unassigned spectra in shotgun proteomics as modified peptides
- (2015) Joel M Chick et al. NATURE BIOTECHNOLOGY
- GlycoMaster DB: Software To Assist the Automated Identification of N-Linked Glycopeptides by Tandem Mass Spectrometry
- (2014) Lin He et al. JOURNAL OF PROTEOME RESEARCH
- Hunting for Unexpected Post-Translational Modifications by Spectral Library Searching with Tier-Wise Scoring
- (2014) Chun Wai Manson Ma et al. JOURNAL OF PROTEOME RESEARCH
- The GalNAc-type O-Glycoproteome of CHO Cells Characterized by the SimpleCell Strategy
- (2014) Zhang Yang et al. MOLECULAR & CELLULAR PROTEOMICS
- GlycoPep Detector: A Tool for Assigning Mass Spectrometry Data of N-Linked Glycopeptides on the Basis of Their Electron Transfer Dissociation Spectra
- (2013) Zhikai Zhu et al. ANALYTICAL CHEMISTRY
- Computational Framework for Identification of Intact Glycopeptides in Complex Samples
- (2013) Anoop Mayampurath et al. ANALYTICAL CHEMISTRY
- The role of protein glycosylation in Alzheimer disease
- (2013) Sophia Schedin-Weiss et al. FEBS Journal
- N- andO-Glycosylation in the Murine Synaptosome
- (2013) Jonathan C. Trinidad et al. MOLECULAR & CELLULAR PROTEOMICS
- pyOpenMS: A Python-based interface to the OpenMS mass-spectrometry algorithm library
- (2013) Hannes L. Röst et al. PROTEOMICS
- Fragmentation characteristics of glycopeptides
- (2012) Károly Vékey et al. INTERNATIONAL JOURNAL OF MASS SPECTROMETRY
- Comet: An open-source MS/MS sequence database search tool
- (2012) Jimmy K. Eng et al. PROTEOMICS
- QuickMod: A Tool for Open Modification Spectrum Library Searches
- (2011) Erik Ahrné et al. JOURNAL OF PROTEOME RESEARCH
- Mass spectrometric glycan rearrangements
- (2011) Manfred Wuhrer et al. MASS SPECTROMETRY REVIEWS
- Fast Multi-blind Modification Search through Tandem Mass Spectrometry
- (2011) Seungjin Na et al. MOLECULAR & CELLULAR PROTEOMICS
- Quantitative site-specific analysis of protein glycosylation by LC-MS using different glycopeptide-enrichment strategies
- (2009) Jessica Wohlgemuth et al. ANALYTICAL BIOCHEMISTRY
- Infrared Photoactivation Reduces Peptide Folding and Hydrogen-Atom Migration following ETD Tandem Mass Spectrometry
- (2009) Aaron R. Ledvina et al. ANGEWANDTE CHEMIE-INTERNATIONAL EDITION
- Biopython: freely available Python tools for computational molecular biology and bioinformatics
- (2009) P. J. A. Cock et al. BIOINFORMATICS
- Mucin-type O-glycosylation - putting the pieces together
- (2009) Pia H. Jensen et al. FEBS Journal
- Factors That Influence Fragmentation Behavior of N-Linked Glycopeptide Ions
- (2008) Richard R. Seipert et al. ANALYTICAL CHEMISTRY
- ProteoWizard: open source software for rapid proteomics tools development
- (2008) Darren Kessner et al. BIOINFORMATICS
- In-depth Analysis of Tandem Mass Spectrometry Data from Disparate Instrument Types
- (2008) Robert J. Chalkley et al. MOLECULAR & CELLULAR PROTEOMICS
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