4.7 Article

Revealing new sponge-associated cyanobacterial diversity: Novel genera and species

期刊

出版社

ACADEMIC PRESS INC ELSEVIER SCIENCE
DOI: 10.1016/j.ympev.2020.106991

关键词

Synechococcales; Rhodoploca; Cymatolege; Metis; Thalassoporum; Aegeococcus

资金

  1. General Secretariat for Research and Technology (GSRT) [938]
  2. Hellenic Foundation for Research and Innovation (HFRI) [938]

向作者/读者索取更多资源

This study isolated new cyanobacterial strains from Aegean Sea sponges and re-evaluated their classification using a comprehensive approach, resulting in the description of five new genera and seven new species, as well as a new pleurocapsalean species. The findings highlight the importance of polyphasic culture-dependent approaches in revealing the true cyanobacterial diversity associated with sponges.
Cyanobacteria are often reported as abundant components of the sponge microbiome; however their diversity below the phylum level is still underestimated. Aiming to broaden our knowledge of sponge-cyanobacteria association, we isolated cyanobacterial strains from Aegean Sea sponges in previous research, which revealed high degree of novel cyanobacterial diversity. Herein, we aim to further characterize sponge-associated cyanobacteria and re-evaluate their classification based on an extensive polyphasic approach, i.e. a combination of molecular, morphological and ecological data. This approach resulted in the description of five new genera (Rhodoploca, Cymatolege, Metis, Aegeococcus, and Thalassoporum) and seven new species (R. sivonenia, C. spiroidea, C. isodiametrica, M. fasciculata, A. anagnostidisi, A. thureti, T. komareki) inside the order Synechococcales, and a new pleurocapsalean species (Xenococcus spongiosum). X. spongiosum is a baeocyte-producing species that shares some morphological features with other Xenococcus species, but has distinct phylogenetic and ecological identity. Rhodoploca, Cymatolege, Meats and Thalassoporum are novel well supported linages of filamentous cyanobacteria that possess distinct characters compared to their sister taxa. Aegeococcus is a novel monophyletic linage of Synechococcus-like cyanobacteria exhibiting a unique ecology, as sponge-dweller. The considerable number of novel taxa characterized in this study highlights the importance of employing polyphasic culture-dependent approaches in order to reveal the true cyanobacterial diversity associated with sponges.

作者

我是这篇论文的作者
点击您的名字以认领此论文并将其添加到您的个人资料中。

评论

主要评分

4.7
评分不足

次要评分

新颖性
-
重要性
-
科学严谨性
-
评价这篇论文

推荐

Article Food Science & Technology

Bioprospecting Sponge-Associated Marine Cyanobacteria to Produce Bioactive Compounds

Despoina Konstantinou, Eleni Mavrogonatou, Sevasti-Kiriaki Zervou, Panagiotis Giannogonas, Spyros Gkelis

TOXINS (2020)

Article Biochemistry & Molecular Biology

Beyond Microcystins: Cyanobacterial Extracts Induce Cytoskeletal Alterations in Rice Root Cells

Dimitris Pappas, Manthos Panou, Ioannis-Dimosthenis S. Adamakis, Spyros Gkelis, Emmanuel Panteris

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2020)

Article Chemistry, Medicinal

Genome Reduction and Secondary Metabolism of the Marine Sponge-Associated Cyanobacterium Leptothoe

Despoina Konstantinou, Rafael Popin, David P. Fewer, Kaarina Sivonen, Spyros Gkelis

Summary: Sponges form symbiotic relationships with diverse and abundant microbial communities, with cyanobacteria playing important roles. Genomic analysis of the cyanobacterial genus Leptothoe revealed sponge-associated strains showing features of symbiotic lifestyle despite genome reduction, harboring biosynthetic gene clusters for novel natural products. Comparisons with chemically rich cyanobacteria suggest Leptothoe as a promising candidate for biosynthesis of novel natural products in marine environments.

MARINE DRUGS (2021)

Article Limnology

Stratification strength and light climate explain variation in chlorophyll a at the continental scale in a European multilake survey in a heatwave summer

Daphne Donis, Evanthia Mantzouki, Daniel F. McGinnis, Dominic Vachon, Irene Gallego, Hans-Peter Grossart, Lisette N. de Senerpont Domis, Sven Teurlincx, Laura Seelen, Miquel Lurling, Yvon Verstijnen, Valentini Maliaka, Jeremy Fonvielle, Petra M. Visser, Jolanda Verspagen, Maria van Herk, Maria G. Antoniou, Nikoletta Tsiarta, Valerie McCarthy, Victor C. Perello, Danielle Machado-Vieira, Alinne Gurjao de Oliveira, Dubravka Spoljaric Maronic, Filip Stevic, Tanja Zuna Pfeiffer, Itana Bokan Vucelic, Petar Zutinic, Marija Gligora Udovic, Ludek Blaha, Rodan GeriS, Marketa Fankova, Kirsten Seestern Christoffersen, Trine Perlt Warming, Tonu Feldmann, Alo Laas, Kristel Panksep, Lea Tuvikene, Kersti Kangro, Judita Koreiviene, Jurate Karosiene, Jurate Kasperoviciene, Ksenija Savadova-Ratkus, Irma Vitonyte, Kerstin Haggqvist, Pauliina Salmi, Lauri Arvola, Karl Rothhaupt, Christos Avagianos, Triantafyllos Kaloudis, Spyros Gkelis, Manthos Panou, Theodoros Triantis, Sevasti-Kiriaki Zervou, Anastasia Hiskia, Ulrike Obertegger, Adriano Boscaini, Giovanna Flaim, Nico Salmaso, Leonardo Cerasino, Sigrid Haande, Birger Skjelbred, Magdalena Grabowska, Maciej Karpowicz, Damian Chmura, Lidia Nawrocka, Justyna Kobos, Hanna Mazur-Marzec, Pablo Alcaraz-Parraga, Elzbieta Wilk-Wozniak, Wojciech Krzton, Edward Walusiak, Ilona Gagala-Borowska, Joana Mankiewicz-Boczek, Magdalena Toporowska, Barbara Pawlik-Skowronska, Michal Niedzwiecki, Agnieszka Napiorkowska-Krzebietke, Julita Dunalska, Justyna Sienska, Daniel Szymanski, Marek Kruk, Agnieszka Budzynska, Ryszard Goldyn, Anna Kozak, Joanna Rosinska, Piotr Domek, Natalia Jakubowska-Krepska, Kinga Kwasizur, Beata Messyasz, Mikolaj Kokocinski, Beata Madrecka-Witkowska, Iwona Kostrzewska-Szlakowska, Magdalena Frak, Agnieszka Bankowska-Sobczak, Michal Wasilewicz, Agnieszka Ochocka, Agnieszka Pasztaleniec, Iwona Jasser, Ana M. Antao-Geraldes, Manel Leira, Vitor Vasconcelos, Joao Morais, Micaela Vale, Pedro M. Raposeiro, Vitor Goncalves, Boris Aleksovski, Svetislav Krstic, Hana Nemova, Iveta Drastichova, Lucia Chomova, Spela Remec-Rekar, Tina Elersek, Lars-Anders Hansson, Pablo Urrutia-Cordero, Andrea G. Bravo, Moritz Buck, William Colom-Montero, Kristiina Mustonen, Don Pierson, Yang Yang, Jessica Richardson, Christine Edwards, Hannah Cromie, Jordi Delgado-Martin, David Garcia, Jose Luis Cereijo, Joan Goma, Mari Carmen Trapote, Teresa Vegas-Vilarrubia, Biel Obrador, Ana Garcia-Murcia, Monserrat Real, Elvira Romans, Jordi Noguero-Ribes, David Parreno Duque, Elisabeth Fernandez-Moran, Barbara Ubeda, Jose Angel Galvez, Nuria Catalan, Carmen Perez-Martinez, Eloisa Ramos-Rodriguez, Carmen Cillero-Castro, Enrique Moreno-Ostos, Jose Maria Blanco, Valeriano Rodriguez, Jorge Juan Montes-Perez, Roberto L. Palomino, Estela Rodriguez-Perez, Armand Hernandez, Rafael Carballeira, Antonio Camacho, Antonio Picazo, Carlos Rochera, Anna C. Santamans, Carmen Ferriol, Susana Romo, Juan Miguel Soria, Arda Ozen, Tunay Karan, Nilsun Demir, Meryem Beklioglu, Nur Filiz, Eti Levi, Ugur Iskin, Gizem Bezirci, Ulku Nihan Tavsanoglu, Kemal Celik, Koray Ozhan, Nusret Karakaya, Mehmet Ali Turan Kocer, Mete Yilmaz, Faruk Maraslioglu, Elif Neyran Soylu, Ozden Fakioglu, Meral Apaydin Yagci, Sakir Cinar, Kadir Capkin, Abdulkadir Yagci, Mehmet Cesur, Fuat Bilgin, Cafer Bulut, Rahmi Uysal, Koker Latife, Reyhan Akcaalan, Meric Albay, Mehmet Tahir Alp, Korhan Ozkan, Tugba Ongun Sevindik, Hatice Tunca, Burcin Onem, Hans Paerl, Cayelan C. Carey, Bastiaan W. Ibelings

Summary: This study collected data from 230 lakes in Europe, finding that light climate and stratification strength are the main explanatory variables for phytoplankton biomass variance. In nutrient-rich lakes, light and stratification metrics are better predictors for phytoplankton biomass.

LIMNOLOGY AND OCEANOGRAPHY (2021)

Article Biochemistry & Molecular Biology

Unravelling unknown cyanobacteria diversity linked with HCN production

Manthos Panou, Spyros Gkelis

Summary: This study isolated and characterized 81 strains of cyanobacteria from different environments, resulting in the description of five new genera and four new species. The widespread production of HCN among different taxa and habitats was reported for the first time, showcasing novel cyanobacteria diversity.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2022)

Article Food Science & Technology

Anabaenopeptins from Cyanobacteria in Freshwater Bodies of Greece

Sevasti-Kiriaki Zervou, Triantafyllos Kaloudis, Spyros Gkelis, Anastasia Hiskia, Hanna Mazur-Marzec

Summary: This study investigated the occurrence and structural variety of anabaenopeptins (APs) in cyanobacterial blooms and cultured strains from Greek freshwaters. The results revealed the widespread presence of APs in bloom samples, with multiple congeners co-occurring. Only one strain from the cultured samples was found to contain APs.

TOXINS (2022)

Article Environmental Sciences

Assessment of Nutrients Recovery Capacity and Biomass Growth of Four Microalgae Species in Anaerobic Digestion Effluent

Paraskevi Psachoulia, Sofia-Natalia Schortsianiti, Urania Lortou, Spyros Gkelis, Christos Chatzidoukas, Petros Samaras

Summary: This study evaluated the bioremediation capacity of four microalgae species for anaerobic digestion effluent rich in ammonium nitrogen. The results showed that ammonium nitrogen is preferable for microalgae growth, and the use of ADE as a cultivation medium increased the carbohydrate content in the species.
Article Biochemistry & Molecular Biology

Cyanobacteria in hot pursuit: Characterization of cyanobacteria strains, including novel taxa, isolated from geothermal habitats from different ecoregions of the world

Iwona Jasser, Manthos Panou, Nataliia Khomutovska, Malgorzata Sandzewicz, Emmanuel Panteris, Toirbek Niyatbekov, Lukasz Lach, Jan Kwiatowski, Mikolaj Kokocinski, Spyros Gkelis

Summary: This study discovered novel cyanobacteria diversity in thermal springs from different environments. Two new genera and one new species were described. The study also found a correlation between thermotolerance and genetic background, suggesting possible strategic focusing of screening programs on underexploited taxa in these habitats.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2022)

Correction Biochemistry & Molecular Biology

Unravelling unknown cyanobacteria diversity linked with HCN production (vol 166, 107322, 2022)

Manthos Panou, Spyros Gkelis

MOLECULAR PHYLOGENETICS AND EVOLUTION (2022)

Article Multidisciplinary Sciences

Global urban environmental change drives adaptation in white clover

James S. Santangelo, Rob W. Ness, Beata Cohan, Connor R. Fitzpatrick, Simon G. Innes, Sophie Koch, Lindsay S. Miles, Samreen Munim, Pedro R. Peres-Neto, Cindy Prashad, Alex T. Tong, Windsor E. Aguirre, Philips O. Akinwole, Marina Alberti, Jackie Alvarez, Jill T. Anderson, Joseph J. Anderson, Yoshino Ando, Nigel R. Andrew, Fabio Angeoletto, Daniel N. Anstett, Julia Anstett, Felipe Aoki-Goncalves, A. Z. Andis Arietta, Mary T. K. Arroyo, Emily J. Austen, Fernanda Baena-Diaz, Cory A. Barker, Howard A. Baylis, Julia M. Beliz, Alfonso Benitez-Mora, David Bickford, Gabriela Biedebach, Gwylim S. Blackburn, Mannfred M. A. Boehm, Stephen P. Bonser, Dries Bonte, Jesse R. Bragger, Cristina Branquinho, Kristien Brans, Jorge C. Bresciano, Peta D. Brom, Anna Bucharova, Briana Burt, James F. Cahill, Katelyn D. Campbell, Elizabeth J. Carlen, Diego Carmona, Maria Clara Castellanos, Giada Centenaro, Izan Chalen, Jaime A. Chaves, Mariana Chavez-Pesqueira, Xiao-Yong Chen, Angela M. Chilton, Kristina M. Chomiak, Diego F. Cisneros-Heredia, Ibrahim K. Cisse, Aimee T. Classen, Mattheau S. Comerford, Camila Cordoba Fradinger, Hannah Corney, Andrew J. Crawford, Kerri M. Crawford, Maxime Dahirel, Santiago David, Robert De Haan, Nicholas J. Deacon, Clare Dean, Ek Del-Val, Eleftherios K. Deligiannis, Derek Denney, Margarete A. Dettlaff, Michelle F. DiLeo, Yuan-Yuan Ding, Moises E. Dominguez-Lopez, Davide M. Dominoni, Savannah L. Draud, Karen Dyson, Jacintha Ellers, Carlos Espinosa, Liliana Essi, Mohsen Falahati-Anbaran, Jessica C. F. Falcao, Hayden T. Fargo, Mark D. E. Fellowes, Raina M. Fitzpatrick, Leah E. Flaherty, Padraic J. Flood, Maria F. Flores, Juan Fornoni, Amy G. Foster, Christopher J. Frost, Tracy L. Fuentes, Justin R. Fulkerson, Edeline Gagnon, Frauke Garbsch, Colin J. Garroway, Aleeza C. Gerstein, Mischa M. Giasson, E. Binney Girdler, Spyros Gkelis, William Godsoe, Anneke M. Golemiec, Mireille Golemiec, Cesar Gonzalez-Lagos, Amanda J. Gorton, Kiyoko M. Gotanda, Gustaf Granath, Stephan Greiner, Joanna S. Griffiths, Filipa Grilo, Pedro E. Gundel, Benjamin Hamilton, Joyce M. Hardin, Tianhua He, Stephen B. Heard, Andre F. Henriques, Melissa Hernandez-Poveda, Molly C. Hetherington-Rauth, Sarah J. Hill, Dieter F. Hochuli, Kathryn A. Hodgins, Glen R. Hood, Gareth R. Hopkins, Katherine A. Hovanes, Ava R. Howard, Sierra C. Hubbard, Carlos N. Ibarra-Cerdena, Carlos Iniguez-Armijos, Paola Jara-Arancio, Benjamin J. M. Jarrett, Manon Jeannot, Vania Jimenez-Lobato, Mae Johnson, Oscar Johnson, Philip P. Johnson, Reagan Johnson, Matthew P. Josephson, Meen Chel Jung, Michael G. Just, Aapo Kahilainen, Otto S. Kailing, Eunice Karinho-Betancourt, Regina Karousou, Lauren A. Kirn, Anna Kirschbaum, Anna-Liisa Laine, Jalene M. LaMontagne, Christian Lampei, Carlos Lara, Erica L. Larson, Adrian Lazaro-Lobo, Jennifer H. Le, Deleon S. Leandro, Christopher Lee, Yunting Lei, Carolina A. Leon, Manuel E. Lequerica Tamara, Danica C. Levesque, Wan-Jin Liao, Megan Ljubotina, Hannah Locke, Martin T. Lockett, Tiffany C. Longo, Jeremy T. Lundholm, Thomas MacGillavry, Christopher R. Mackin, Alex R. Mahmoud, Isaac A. Manju, Janine Marien, D. Nayeli Martinez, Marina Martinez-Bartolome, Emily K. Meineke, Wendy Mendoza-Arroyo, Thomas J. S. Merritt, Lila Elizabeth L. Merritt, Giuditta Migiani, Emily S. Minor, Nora Mitchell, Mitra Mohammadi Bazargani, Angela T. Moles, Julia D. Monk, Christopher M. Moore, Paula A. Morales-Morales, Brook T. Moyers, Miriam Munoz-Rojas, Jason Munshi-South, Shannon M. Murphy, Maureen M. Murua, Melisa Neila, Ourania Nikolaidis, Iva Njunji, Peter Nosko, Juan Nunez-Farfan, Takayuki Ohgushi, Kenneth M. Olsen, Oystein H. Opedal, Cristina Ornelas, Amy L. Parachnowitsch, Aaron S. Paratore, Angela M. Parody-Merino, Juraj Paule, Octavio S. Paulo, Joao Carlos Pena, Vera W. Pfeiffer, Pedro Pinho, Anthony Piot, Ilga M. Porth, Nicholas Poulos, Adriana Puentes, Jiao Qu, Estela Quintero-Vallejo, Steve M. Raciti, Joost A. M. Raeymaekers, Krista M. Raveala, Diana J. Rennison, Milton C. Ribeiro, Jonathan L. Richardson, Gonzalo Rivas-Torres, Benjamin J. Rivera, Adam B. Roddy, Erika Rodriguez-Munoz, Jose Raul Roman, Laura S. Rossi, Jennifer K. Rowntree, Travis J. Ryan, Santiago Salinas, Nathan J. Sanders, Luis Y. Santiago-Rosario, Amy M. Savage, J. F. Scheepens, Menno Schilthuizen, Adam C. Schneider, Tiffany Scholier, Jared L. Scott, Summer A. Shaheed, Richard P. Shefferson, Caralee A. Shepard, Jacqui A. Shykoff, Georgianna Silveira, Alexis D. Smith, Lizet Solis-Gabriel, Antonella Soro, Katie Spellman, Kaitlin Stack Whitney, Indra Starke-Ottich, Jorg G. Stephan, Jessica D. Stephens, Justyna Szulc, Marta Szulkin, Ayco J. M. Tack, Italo Tamburrino, Tayler D. Tate, Emmanuel Tergemina, Panagiotis Theodorou, Ken A. Thompson, Caragh G. Threlfall, Robin M. Tinghitella, Lilibeth Toledo-Chelala, Xin Tong, Lea Uroy, Shunsuke Utsumi, Martijn L. Vandegehuchte, Acer VanWallendael, Paula M. Vidal, Susana M. Wadgymar, Ai-Ying Wang, Nian Wang, Montana L. Warbrick, Kenneth D. Whitney, Miriam Wiesmeier, J. Tristian Wiles, Jianqiang Wu, Zoe A. Xirocostas, Zhaogui Yan, Jiahe Yao, Jeremy B. Yoder, Owen Yoshida, Jingxiong Zhang, Zhigang Zhao, Carly D. Ziter, Matthew P. Zuellig, Rebecca A. Zufall, Juan E. Zurita, Sharon E. Zytynska, Marc T. J. Johnson

Summary: This study sampled and analyzed 110,019 white clover plants from 6169 populations in 160 cities globally, finding that urban environmental change drives parallel evolution to some extent. The research demonstrates that urbanization leads to adaptation at a global scale.

SCIENCE (2022)

Article Microbiology

Uncovering New Diversity of Photosynthetic Microorganisms from the Mediterranean Region

Urania Lortou, Emmanuel Panteris, Spyros Gkelis

Summary: Using a polyphasic approach, this study investigated and characterized 18 Chlorophyta isolates. Results revealed the establishment of four new genera and five new species, with some of them being reported for the first time in specific aquatic environments.

MICROORGANISMS (2022)

Article Plant Sciences

Microcystin-LR and cyanobacterial extracts alter the distribution of cell wall matrix components in rice root cells

Dimitris Pappas, Eleni Giannoutsou, Emmanuel Panteris, Spyros Gkelis, Ioannis-Dimosthenis S. Adamakis

Summary: Cyanobacterial toxins are found to disrupt the plant cytoskeleton and affect the structure and composition of the cell wall. This study investigated the alterations in cell wall matrix after treatments with cyanotoxins in rice root cells. The distribution patterns of homogalacturonan and arabinan were found to be altered, along with changes in pectin methylesterase activity. Increased intracellular Ca2+ levels, callose and mixed linkage glucans deposition were observed. The exact mechanism of cyanobacterial toxicity against the cell wall needs further investigation.

PLANT PHYSIOLOGY AND BIOCHEMISTRY (2022)

Article Environmental Sciences

Beneath the Aegean Sun: Investigating Dunaliella Strains' Diversity from Greek Saltworks

Urania Lortou, Manthos Panou, Georgia Papapanagiotou, Georgia Florokapi, Christos Giannakopoulos, Savvas Kavoukis, Georgios Iakovou, Giorgos Zalidis, Konstantinos Triantafyllidis, Spyros Gkelis

Summary: This study isolated and identified 15 Dunaliella strains from active and abandoned saltworks in Greece, which were classified into nine species based on morphological features. The phylogenetic analysis revealed distinct clades among different Dunaliella species, indicating that morphological features may not always align with phylogenetic relationships. The strains produced a low amount of beta-carotene under laboratory conditions. This study provides valuable information on the diversity of Dunaliella strains in Greek saltworks and highlights the need for further molecular data on Dunaliella spp.
Meeting Abstract Plant Sciences

Evaluation of ß-carotene production from Dunaliella strains isolated from Greek solar saltworks

G. Papapanagiotou, M. Panou, U. Lortou, T. Piszter, S. Kavoukis, G. Iakovou, A. Margellou, G. Zalidis, K. Triantafyllidis, S. Gkelis

PLANTA MEDICA (2022)

Article Biochemistry & Molecular Biology

Paraphyly and cryptic diversity unveils unexpected challenges in the naked lichens (Calvitimela, Lecanoromycetes, Ascomycota)

Markus Osaland Fjelde, Einar Timdal, Reidar Haugan, Mika Bendiksby

Summary: This study investigated the taxonomy of the crustose lichen genus Calvitimela using molecular phylogenetics and morphological observations. The results revealed evolutionarily old and deeply divergent lineages within Calvitimela, with overlapping morphological characters between different subgenera. Chemical characters were informative at the level of subgenera but often homoplastic at the species level. A practical taxonomy of Calvitimela was proposed based on these findings.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2024)

Article Biochemistry & Molecular Biology

Diversification of freshwater crabs on the sky islands in the Hengduan Mountains Region, China

Bo-Yang Shi, Da Pan, Kang-Qin Zhang, Tian-Yu Gu, Darren C. J. Yeo, Peter K. L. Ng, Neil Cumberlidge, Hong-Ying Sun

Summary: This study investigates the evolutionary history and speciation mechanisms of montane potamids in the Hengduan Mountains Region. The results suggest that the vicariance events of these crabs are correlated with the emergence of sky islands due to the uplift of the mountains. The mountain ridges provided corridors for their dispersal and past climatic conditions played a crucial role in their evolutionary history. The mechanisms isolating sky islands are reinforced by the climatic features of dry-hot valleys and continue to affect local diversification.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2024)

Article Biochemistry & Molecular Biology

Evolutionary history and systematics of European blind mole rats (Rodentia: Spalacidae: Nannospalax): Multilocus phylogeny and species delimitation in a puzzling group

Attila Nemeth, Edvard Mizsei, Levente Laczko, David Czaban, Zsolt Hegyeli, Szabolcs Lengyel, Gabor Csorba, Gabor Sramko

Summary: Species delimitation of European blind mole rats is challenging due to their small morphological differences and complex chromosomal evolution. This study provides a comprehensive framework to improve understanding of their evolutionary history and revise their taxonomy. The results reveal the presence of multiple superspecies and species, with distinct geographic patterns and rapid chromosomal evolution.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2024)

Article Biochemistry & Molecular Biology

Phylogenomic analyses reveal a single deep-water colonisation in Patellogastropoda

Ying Qi, Zhaoyan Zhong, Xu Liu, Xing He, Yadong Zhou, Lili Zhang, Chong Chen, Katrin Linse, Jian-Wen Qiu, Jin Sun

Summary: This study investigates the phylogenetic relationships among patellogastropod families using mitochondrial and phylogenomic data. The results show that the mitochondrial phylogeny recovers monophyly of most families, but the relationships among families are still contentious. However, a more robust family-level topology consistent with morphology is achieved by phylogenomics. Additionally, the mainly deep-water families are found to be monophyletic, suggesting a single colonization of the deep water during the Jurassic.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2024)

Article Biochemistry & Molecular Biology

A model of hybrid speciation process drawn from three new poplar species originating from distant hybridization between sections

Yu-Jie Shi, Jin -Liang Huang, Jia-Xuan Mi, Jing Li, Fan-Yu Meng, Yu Zhong, Fang He, Fei -Fei Tian, Fan Zhang, Liang-Hua Chen, Han-Bo Yang, Hong-Lin Hu, Xue-Qin Wan

Summary: Despite numerous studies on hybrid speciation, our understanding of this process remains limited. In this study, we conducted an 18-year systematic investigation on Populus taxa on the Qinghai-Tibet Plateau and discovered three new taxa that originated from distant hybridization between two different sections. These hybrid taxa demonstrate greater ecological adaptability than their ancestral species due to heterosis. We propose a hybrid speciation process model that can explain important evolutionary concerns.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2024)

Article Biochemistry & Molecular Biology

Phylogenomic position of genetically diverse phagotrophic stramenopile flagellates in the sediment-associated MAST-6 lineage and a potentially halotolerant placididean

Anna Cho, Denis Tikhonenkov, Gordon Lax, Kristina I. Prokina, Patrick J. Keeling

Summary: Unlike conspicuous ochrophytes, many small and overlooked flagellates belonging to basally branching stramenopiles remain poorly characterized at the cellular or genomic level. This study describes four new species, including two new genera, of sediment-dwelling MAST-6 and provides updated phylogenomic tree of stramenopiles. The characterization of these flagellates is important due to their phylogenetic diversity and abundance in various environments.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2024)

Article Biochemistry & Molecular Biology

Phylogenomic conflict analyses of the plastid and mitochondrial genomes via deep genome skimming highlight their independent evolutionary histories: A case study in the cinquefoil genus Potentilla sensu lato (Potentilleae, Rosaceae)

Tian-Tian Xue, Steven B. Janssens, Bin-Bin Liu, Sheng-Xiang Yu

Summary: Phylogenomic conflicts are widespread among genomic data, with most previous studies primarily focusing on nuclear datasets instead of organellar genomes. In this study, we investigated the phylogenetic conflicts within and between plastid and mitochondrial genomes using Potentilla as a case study. We found that both plastid and mitochondrial genomes divided Potentilla into eight highly supported clades, with two newly identified clades. Our results demonstrate that mitochondrial genes can fully resolve phylogenetic relationships among major clades of Potentilla and are not always linked with plastomes in evolutionary history.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2024)

Article Biochemistry & Molecular Biology

Co-phylogeny of a hyper-symbiotic system: Endosymbiotic bacteria (Gammaproteobacteria), chewing lice (Insecta: Phthiraptera) and birds (Passeriformes)

Alexandra A. Grossi, Chunpo Tian, Mengjiao Ren, Fasheng Zou, Daniel R. Gustafsson

Summary: This study suggests that the coevolutionary relationships between chewing lice, endosymbiotic bacteria, and birds are not independent, but the patterns vary depending on the analysis method used. Additionally, louse host-switching does not seem to affect bacterial strains.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2024)

Article Biochemistry & Molecular Biology

Hyper-Cryptic radiation of a tropical montane plant lineage

Ingrid Olivares, Sergio Tusso, Maria Jose Sanin, Marylaure de La Harpe, Oriane Loiseau, Jonathan Rolland, Nicolas Salamin, Michael Kessler, Kentaro K. Shimizu, Margot Paris

Summary: Traditionally, differences between species have been associated with morphological variation. However, the discovery of cryptic diversity suggests that the evolution of distinct lineages can occur without morphological differences. Through genetic analysis, we found that a tropical montane plant lineage is composed of numerous unrecognized genetic groups that are not morphologically distinct. Geographic distance and topography play a crucial role in determining the genetic divergence of these groups.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2024)