Genome-wide discovery and validation of Eucalyptus small RNAs reveals variable patterns of conservation and diversity across species of Myrtaceae

Profiling microRNAs in Eucalyptus grandis reveals no mutual relationship between alterations in miR156 and miR172 expression and adventitious root induction during development

(2014) Aviv Levy et al.   BMC GENOMICS

The genome of Eucalyptus grandis

(2014) Alexander A. Myburg et al.   NATURE

Classification and Comparison of Small RNAs from Plants

(2013) Michael J. Axtell   Annual Review of Plant Biology

RNA interference in the nucleus: roles for small RNAs in transcription, epigenetics and beyond

(2013) Stephane E. Castel et al.   NATURE REVIEWS GENETICS

Constitutive Expression of a miR319 Gene Alters Plant Development and Enhances Salt and Drought Tolerance in Transgenic Creeping Bentgrass

(2013) M. Zhou et al.   PLANT PHYSIOLOGY

Transcriptome-wide identification and characterization of miRNAs from Pinus densata

(2012) Li-Chuan Wan et al.   BMC GENOMICS

Identification of soybean seed developmental stage-specific and tissue-specific miRNA targets by degradome sequencing

(2012) Md Shamimuzzaman et al.   BMC GENOMICS

Identification of novel microRNAs in Hevea brasiliensis and computational prediction of their targets

(2012) Virginie Gébelin et al.   BMC PLANT BIOLOGY

Identification and characterization of small non-coding RNAs from Chinese fir by high throughput sequencing

(2012) Li-Chuan Wan et al.   BMC PLANT BIOLOGY

Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs

(2012) Hong Zhu et al.   BMC PLANT BIOLOGY

Identification of wild soybean miRNAs and their target genes responsive to aluminum stress

(2012) Qiao-Ying Zeng et al.   BMC PLANT BIOLOGY

Bioinformatics prediction of miRNAs in the Prunus persica genome with validation of their precise sequences by miR-RACE

(2012) Yanping Zhang et al.   JOURNAL OF PLANT PHYSIOLOGY

Regulation of reproductive development by non-coding RNA in Arabidopsis: to flower or not to flower

(2012) Ayako Yamaguchi et al.   JOURNAL OF PLANT RESEARCH

Emerging role for RNA-based regulation in plant immunity

(2012) Dorothee Staiger et al.   NEW PHYTOLOGIST

A MicroRNA Cascade in Plant Defense

(2012) N. A. Eckardt   PLANT CELL

Discovery and profiling of novel and conserved microRNAs during flower development in Carya cathayensis via deep sequencing

(2012) Zheng Jia Wang et al.   PLANTA

A Combined Approach of High-Throughput Sequencing and Degradome Analysis Reveals Tissue Specific Expression of MicroRNAs and Their Targets in Cucumber

(2012) Weihua Mao et al.   PLoS One

Genome-Wide Identification of miRNAs Responsive to Drought in Peach (Prunus persica) by High-Throughput Deep Sequencing

(2012) Vahap Eldem et al.   PLoS One

Identification of MicroRNAs from Eugenia uniflora by High-Throughput Sequencing and Bioinformatics Analysis

(2012) Frank Guzman et al.   PLoS One

microRNAs Associated with Drought Response in the Bioenergy Crop Sugarcane (Saccharum spp.)

(2012) Thaís Helena Ferreira et al.   PLoS One

Plant secondary siRNA production determined by microRNA-duplex structure

(2012) P. A. Manavella et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Silencing and Innate Immunity in Plant Defense Against Viral and Non-Viral Pathogens

(2012) Anna Zvereva et al.   Viruses-Basel

Apple miRNAs and tasiRNAs with novel regulatory networks

(2012) Rui Xia et al.   GENOME BIOLOGY

Expression profile of small RNAs in Acacia mangium secondary xylem tissue with contrasting lignin content - potential regulatory sequences in monolignol biosynthetic pathway

(2011) Seong Siang Ong et al.   BMC GENOMICS

Small RNAs and transposon silencing in plants

(2011) Hidetaka Ito   DEVELOPMENT GROWTH & DIFFERENTIATION

MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs

(2011) J. Zhai et al.   GENES & DEVELOPMENT

psRNATarget: a plant small RNA target analysis server

(2011) Xinbin Dai et al.   NUCLEIC ACIDS RESEARCH

miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades

(2011) Marc R. Friedländer et al.   NUCLEIC ACIDS RESEARCH

Evolution and Functional Diversification ofMIRNAGenes

(2011) Josh T. Cuperus et al.   PLANT CELL

An Atypical Epigenetic Mechanism Affects Uniparental Expression of Pol IV-Dependent siRNAs

(2011) Rebecca A. Mosher et al.   PLoS One

MiRNA Control of Vegetative Phase Change in Trees

(2011) Jia-Wei Wang et al.   PLoS Genetics

Small RNAs in angiosperms: sequence characteristics, distribution and generation

(2010) Dijun Chen et al.   BIOINFORMATICS

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Regulation of flowering time and floral patterning by miR172

(2010) Qian-Hao Zhu et al.   JOURNAL OF EXPERIMENTAL BOTANY

DNA Methylation Mediated by a MicroRNA Pathway

(2010) Liang Wu et al.   MOLECULAR CELL

miRBase: integrating microRNA annotation and deep-sequencing data

(2010) A. Kozomara et al.   NUCLEIC ACIDS RESEARCH

miR156-Targeted and Nontargeted SBP-Box Transcription Factors Act in Concert to Secure Male Fertility inArabidopsis

(2010) Shuping Xing et al.   PLANT CELL

The role of floral organs in carpels, an Arabidopsis loss-of-function mutation in MicroRNA160a, in organogenesis and the mechanism regulating its expression

(2010) Xiaodong Liu et al.   PLANT JOURNAL

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

The Sequential Action of miR156 and miR172 Regulates Developmental Timing in Arabidopsis

(2009) Gang Wu et al.   CELL

Origin, Biogenesis, and Activity of Plant MicroRNAs

(2009) Olivier Voinnet   CELL

Origins and Mechanisms of miRNAs and siRNAs

(2009) Richard W. Carthew et al.   CELL

Uncovering Small RNA-Mediated Responses to Phosphate Deficiency in Arabidopsis by Deep Sequencing

(2009) L.-C. Hsieh et al.   PLANT PHYSIOLOGY

CleaveLand: a pipeline for using degradome data to find cleaved small RNA targets

(2008) C. Addo-Quaye et al.   BIOINFORMATICS

PatMaN: rapid alignment of short sequences to large databases

(2008) Kay Prüfer et al.   BIOINFORMATICS

A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains

(2008) Q.-H. Zhu et al.   GENOME RESEARCH

Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa

(2008) R. D. Morin et al.   GENOME RESEARCH

Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening

(2008) S. Moxon et al.   GENOME RESEARCH

Eucalyptusapplied genomics: from gene sequences to breeding tools

(2008) Dario Grattapaglia et al.   NEW PHYTOLOGIST

Criteria for Annotation of Plant MicroRNAs

(2008) B. C. Meyers et al.   PLANT CELL

Characterization of Unique Small RNA Populations from Rice Grain

(2008) Sara E. Heisel et al.   PLoS One