Mobile element insertions are frequent in oesophageal adenocarcinomas and can mislead paired-end sequencing analysis

Frequent L1 retrotranspositions originating from TTC28 in colorectal cancer

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Long Interspersed Element-1 Protein Expression Is a Hallmark of Many Human Cancers

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Somatic retrotransposition in human cancer revealed by whole-genome and exome sequencing

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Discovery and saturation analysis of cancer genes across 21 tumour types

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Ordering of mutations in preinvasive disease stages of esophageal carcinogenesis

(2014) Jamie M J Weaver et al.   NATURE GENETICS

euL1db: the European database of L1HS retrotransposon insertions in humans

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Extensive transduction of nonrepetitive DNA mediated by L1 retrotransposition in cancer genomes

(2014) J. M. C. Tubio et al.   SCIENCE

Processed pseudogenes acquired somatically during cancer development

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Endogenous Retrotransposition Activates Oncogenic Pathways in Hepatocellular Carcinoma

(2013) Ruchi Shukla et al.   CELL

Cumulative Haploinsufficiency and Triplosensitivity Drive Aneuploidy Patterns and Shape the Cancer Genome

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Transduction-Specific ATLAS Reveals a Cohort of Highly Active L1 Retrotransposons in Human Populations

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Exome and whole-genome sequencing of esophageal adenocarcinoma identifies recurrent driver events and mutational complexity

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The Relative Timing of Mutations in a Breast Cancer Genome

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Active Transposition in Genomes

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Structural analysis of the genome of breast cancer cell line ZR-75-30 identifies twelve expressed fusion genes

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Active human retrotransposons: variation and disease

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Extensive somatic L1 retrotransposition in colorectal tumors

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Recurrent R-spondin fusions in colon cancer

(2012) Somasekar Seshagiri et al.   NATURE

p53 cooperates with DNA methylation and a suicidal interferon response to maintain epigenetic silencing of repeats and noncoding RNAs

(2012) K. I. Leonova et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Landscape of Somatic Retrotransposition in Human Cancers

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LINE-1 Elements in Structural Variation and Disease

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Large duplications at reciprocal translocation breakpoints that might be the counterpart of large deletions and could arise from stalled replication bubbles

(2011) K. D. Howarth et al.   GENOME RESEARCH

Retrotransposition of marked SVA elements by human L1s in cultured cells

(2011) Dustin C. Hancks et al.   HUMAN MOLECULAR GENETICS

Pathogenic orphan transduction created by a nonreference LINE-1 retrotransposon

(2011) Szilvia Solyom et al.   HUMAN MUTATION

The role of tandem duplicator phenotype in tumour evolution in high-grade serous ovarian cancer

(2011) Charlotte KY Ng et al.   JOURNAL OF PATHOLOGY

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Genome structural variation discovery and genotyping

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Glucocorticoid Regulation of SLIT/ROBO Tumour Suppressor Genes in the Ovarian Surface Epithelium and Ovarian Cancer Cells

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Natural Mutagenesis of Human Genomes by Endogenous Retrotransposons

(2010) Rebecca C. Iskow et al.   CELL

Verification and Unmasking of Widely Used Human Esophageal Adenocarcinoma Cell Lines

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L1 retrotransposition in neurons is modulated by MeCP2

(2010) Alysson R. Muotri et al.   NATURE

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Complex landscapes of somatic rearrangement in human breast cancer genomes

(2009) Philip J. Stephens et al.   NATURE