Wood construction more strongly shapes deadwood microbial communities than spatial location over 5 years of decay

Parenchyma Abundance in Wood of Evergreen Trees Varies Independently of Nutrients

(2020) Martyna M. Kotowska et al.   Frontiers in Plant Science

An evolutionary signal to fungal succession during plant litter decay

(2019) Sasha Vivelo et al.   FEMS MICROBIOLOGY ECOLOGY

Fungal functional ecology: bringing a trait‐based approach to plant‐associated fungi

(2019) Amy E. Zanne et al.   BIOLOGICAL REVIEWS

Functional diversity of ligninolytic fungi associated with leaf litter decomposition

(2019) Takashi Osono   ECOLOGICAL RESEARCH

Accurate forest projections require long‐term wood decay experiments because plant trait effects change through time

(2019) Brad Oberle et al.   GLOBAL CHANGE BIOLOGY

Species associations overwhelm abiotic conditions to dictate the structure and function of wood-decay fungal communities

(2018) Daniel S. Maynard et al.   ECOLOGY

Variation in range size and dispersal capabilities of microbial taxa

(2018) Mallory J. Choudoir et al.   ECOLOGY

Traits drive global wood decomposition rates more than climate

(2018) Zhenhong Hu et al.   GLOBAL CHANGE BIOLOGY

Methanotrophs are core members of the diazotroph community in decaying Norway spruce logs

(2018) Raisa Mäkipää et al.   SOIL BIOLOGY & BIOCHEMISTRY

Interactions between soil- and dead wood-inhabiting fungal communities during the decay of Norway spruce logs

(2017) Raisa Mäkipää et al.   ISME Journal

Microbiome Datasets Are Compositional: And This Is Not Optional

(2017) Gregory B. Gloor et al.   Frontiers in Microbiology

Dynamics of fungal community composition, decomposition and resulting deadwood properties in logs of Fagus sylvatica , Picea abies and Pinus sylvestris

(2016) Tobias Arnstadt et al.   FOREST ECOLOGY AND MANAGEMENT

Disentangling the effects of forest-stand type and dead-wood origin of the early successional stage on the diversity of wood-inhabiting fungi

(2016) Kristin Baber et al.   FOREST ECOLOGY AND MANAGEMENT

Fungal endophytes as priority colonizers initiating wood decomposition

(2016) Zewei Song et al.   FUNCTIONAL ECOLOGY

Are correlations between deadwood fungal community structure, wood physico-chemical properties and lignin-modifying enzymes stable across different geographical regions?

(2016) Witoon Purahong et al.   Fungal Ecology

Fungi associated with decomposing deadwood in a natural beech-dominated forest

(2016) Petr Baldrian et al.   Fungal Ecology

FUNGuild: An open annotation tool for parsing fungal community datasets by ecological guild

(2016) Nhu H. Nguyen et al.   Fungal Ecology

Citizen science data reveal ecological, historical and evolutionary factors shaping interactions between woody hosts and wood-inhabiting fungi

(2016) Jacob Heilmann-Clausen et al.   NEW PHYTOLOGIST

Wood-inhabiting fungi with tight associations with other species have declined as a response to forest management

(2016) Nerea Abrego et al.   OIKOS

Patterns of natural fungal community assembly during initial decay of coniferous and broadleaf tree logs

(2016) Annemieke van der Wal et al.   Ecosphere

Bacterial Community Succession in Pine-Wood Decomposition

(2016) Anna M. Kielak et al.   Frontiers in Microbiology

Neglected role of fungal community composition in explaining variation in wood decay rates

(2015) A. van der Wal et al.   ECOLOGY

Linking molecular deadwood-inhabiting fungal diversity and community dynamics to ecosystem functions and processes in Central European forests

(2015) Björn Hoppe et al.   FUNGAL DIVERSITY

Habitat models of wood-inhabiting fungi along a decay gradient of Norway spruce logs

(2015) Tiina Rajala et al.   Fungal Ecology

Communities of wood-inhabiting fungi in dead pine logs along a geographical gradient in Japan

(2015) Yu Fukasawa et al.   Fungal Ecology

Enzymatic systems involved in decomposition reflects the ecology and taxonomy of saprotrophic fungi

(2015) Ivana Eichlerová et al.   Fungal Ecology

Priority effects during fungal community establishment in beech wood

(2015) Jennifer Hiscox et al.   ISME Journal

A deteriorating state of affairs: How endogenous and exogenous factors determine plant decay rates

(2015) Amy E. Zanne et al.   JOURNAL OF ECOLOGY

So Many Variables: Joint Modeling in Community Ecology

(2015) David I. Warton et al.   TRENDS IN ECOLOGY & EVOLUTION

Nitrogen translocation and accumulation by a cord-forming fungus (Hypholoma fasciculare) into simulated woody debris

(2014) T.J. Philpott et al.   FOREST ECOLOGY AND MANAGEMENT

Species associations during the succession of wood-inhabiting fungal communities

(2014) Elisabet Ottosson et al.   Fungal Ecology

CTFS-ForestGEO: a worldwide network monitoring forests in an era of global change

(2014) Kristina J. Anderson-Teixeira et al.   GLOBAL CHANGE BIOLOGY

Fungal and Bacterial Community Succession Differs for Three Wood Types during Decay in a Forest Soil

(2014) Lynn Prewitt et al.   MICROBIAL ECOLOGY

Extensive sampling of basidiomycete genomes demonstrates inadequacy of the white-rot/brown-rot paradigm for wood decay fungi

(2014) Robert Riley et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Global diversity and geography of soil fungi

(2014) L. Tedersoo et al.   SCIENCE

PEAR: a fast and accurate Illumina Paired-End reAd mergeR

(2013) J. Zhang et al.   BIOINFORMATICS

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Fungal community dynamics in relation to substrate quality of decaying Norway spruce (Picea abies [L.] Karst.) logs in boreal forests

(2012) Tiina Rajala et al.   FEMS MICROBIOLOGY ECOLOGY

Cellulose utilization in forest litter and soil: identification of bacterial and fungal decomposers

(2012) Martina Štursová et al.   FEMS MICROBIOLOGY ECOLOGY

Patterns of fungal communities among and within decaying logs, revealed by 454 sequencing

(2012) A. Kubartová et al.   MOLECULAR ECOLOGY

Nitrogen uptake of Hypholoma fasciculare and coexisting bacteria

(2012) Petra Weißhaupt et al.   MYCOLOGICAL PROGRESS

The Paleozoic Origin of Enzymatic Lignin Decomposition Reconstructed from 31 Fungal Genomes

(2012) D. Floudas et al.   SCIENCE

Do assembly history effects attenuate from species to ecosystem properties? A field test with wood-inhabiting fungi

(2011) Ian A. Dickie et al.   ECOLOGY LETTERS

Initial fungal colonizer affects mass loss and fungal community development in Picea abies logs 6yr after inoculation

(2011) Daniel L. Lindner et al.   Fungal Ecology

RNA reveals a succession of active fungi during the decay of Norway spruce logs

(2011) Tiina Rajala et al.   Fungal Ecology

Simulated nitrogen deposition affects wood decomposition by cord-forming fungi

(2011) Daniel P. Bebber et al.   OECOLOGIA

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Mechanism of antibacterial activity of the white-rot fungus Hypholoma fasciculare colonizing wood

(2010) Wietse de Boer et al.   CANADIAN JOURNAL OF MICROBIOLOGY

Assembly history dictates ecosystem functioning: evidence from wood decomposer communities

(2010) Tadashi Fukami et al.   ECOLOGY LETTERS

Methyloferula stellata gen. nov., sp. nov., an acidophilic, obligately methanotrophic bacterium that possesses only a soluble methane monooxygenase

(2010) A. V. Vorobev et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

The UNITE database for molecular identification of fungi - recent updates and future perspectives

(2010) Kessy Abarenkov et al.   NEW PHYTOLOGIST

Impact of white-rot fungi on numbers and community composition of bacteria colonizing beech wood from forest soil

(2009) Larissa B. Folman et al.   FEMS MICROBIOLOGY ECOLOGY

Effects of cloning and root-tip size on observations of fungal ITS sequences from Picea glauca roots

(2009) Daniel L. Lindner et al.   MYCOLOGIA

Plant species traits are the predominant control on litter decomposition rates within biomes worldwide

(2008) William K. Cornwell et al.   ECOLOGY LETTERS

Global meta-analysis of wood decomposition rates: a role for trait variation among tree species?

(2008) James T. Weedon et al.   ECOLOGY LETTERS

“compositions”: A unified R package to analyze compositional data

(2007) K. Gerald van den Boogaart et al.   COMPUTERS & GEOSCIENCES