Transcriptomics of diapause in an isogenic self-fertilizing vertebrate

The evolution of an annual life cycle in killifish: adaptation to ephemeral aquatic environments through embryonic diapause

(2015) Andrew I. Furness   BIOLOGICAL REVIEWS

Transcriptional responses to fluctuating thermal regimes underpinning differences in survival in the solitary bee Megachile rotundata

(2015) A. S. Torson et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Transcriptome Characterization Analysis of Bactrocera minax and New Insights into Its Pupal Diapause Development with Gene Expression Analysis

(2014) Yongcheng Dong et al.   International Journal of Biological Sciences

Embryonic diapause: development on hold

(2014) Jane C. Fenelon et al.   INTERNATIONAL JOURNAL OF DEVELOPMENTAL BIOLOGY

The BioGRID interaction database: 2015 update

(2014) Andrew Chatr-aryamontri et al.   NUCLEIC ACIDS RESEARCH

Hibernation

(2013) Fritz Geiser   CURRENT BIOLOGY

The zebrafish reference genome sequence and its relationship to the human genome

(2013) Kerstin Howe et al.   NATURE

The genome of the platyfish, Xiphophorus maculatus, provides insights into evolutionary adaptation and several complex traits

(2013) Manfred Schartl et al.   NATURE GENETICS

UniHI 7: an enhanced database for retrieval and interactive analysis of human molecular interaction networks

(2013) Ravi Kiran Reddy Kalathur et al.   NUCLEIC ACIDS RESEARCH

A Rapid Transcriptome Response Is Associated with Desiccation Resistance in Aerially-Exposed Killifish Embryos

(2013) Angèle Tingaud-Sequeira et al.   PLoS One

Embryonic diapause in humans: time to consider?

(2013) Grazyna E Ptak et al.   Reproductive Biology and Endocrinology

Microevolutionary Distribution of Isogenicity in a Self-fertilizing Fish (Kryptolebias marmoratus) in the Florida Keys

(2012) A. Tatarenkov et al.   INTEGRATIVE AND COMPARATIVE BIOLOGY

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

A beginner's guide to eukaryotic genome annotation

(2012) Mark Yandell et al.   NATURE REVIEWS GENETICS

Embryonic development of the self-fertilizing mangrove killifish Kryptolebias marmoratus

(2011) Sulayman Mourabit et al.   DEVELOPMENTAL DYNAMICS

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Integrative genomics viewer

(2011) James T Robinson et al.   NATURE BIOTECHNOLOGY

De novo assembly and analysis of RNA-seq data

(2010) Gordon Robertson et al.   NATURE METHODS

ABySS: A parallel assembler for short read sequence data

(2009) J. T. Simpson et al.   GENOME RESEARCH

ABySS-Explorer: Visualizing Genome Sequence Assemblies

(2009) C.B. Nielsen et al.   IEEE TRANSACTIONS ON VISUALIZATION AND COMPUTER GRAPHICS

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

The Transcriptional Landscape of the Yeast Genome Defined by RNA Sequencing

(2008) U. Nagalakshmi et al.   SCIENCE