An integrative approach to identify hexaploid wheat miRNAome associated with development and tolerance to abiotic stress

Identification and characterization of microRNAs in the flag leaf and developing seed of wheat (Triticum aestivum L.)

(2014) Ran Han et al.   BMC GENOMICS

Whole-genome discovery of miRNAs and their targets in wheat (Triticum aestivum L.)

(2014) Fenglong Sun et al.   BMC PLANT BIOLOGY

mRNA and Small RNA Transcriptomes Reveal Insights into Dynamic Homoeolog Regulation of Allopolyploid Heterosis in Nascent Hexaploid Wheat

(2014) A. Li et al.   PLANT CELL

A Comprehensive Genome-Wide Study on Tissue-Specific and Abiotic Stress-Specific miRNAs in Triticum aestivum

(2014) Ritu Pandey et al.   PLoS One

Flowering time control in ornamental gloxinia (Sinningia speciosa) by manipulation of miR159 expression

(2013) Xiaoyan Li et al.   ANNALS OF BOTANY

Development-associated microRNAs in grains of wheat (Triticum aestivum L.)

(2013) Fanrong Meng et al.   BMC PLANT BIOLOGY

Identification of miRNAs and their targets in wheat (Triticum aestivum L.) by EST analysis

(2013) J. Han et al.   GENETICS AND MOLECULAR RESEARCH

Identification of UV-B-induced microRNAs in wheat

(2013) B. Wang et al.   GENETICS AND MOLECULAR RESEARCH

Role of CBFs as Integrators of Chloroplast Redox, Phytochrome and Plant Hormone Signaling during Cold Acclimation

(2013) Leonid Kurepin et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Draft genome of the wheat A-genome progenitor Triticum urartu

(2013) Hong-Qing Ling et al.   NATURE

Computational prediction of the localization of microRNAs within their pre-miRNA

(2013) Mickael Leclercq et al.   NUCLEIC ACIDS RESEARCH

miRBase: annotating high confidence microRNAs using deep sequencing data

(2013) Ana Kozomara et al.   NUCLEIC ACIDS RESEARCH

Biogenesis, Turnover, and Mode of Action of Plant MicroRNAs

(2013) K. Rogers et al.   PLANT CELL

Computational Identification and Comparative Analysis of miRNAs in Wheat Group 7 Chromosomes

(2013) Pingchuan Deng et al.   PLANT MOLECULAR BIOLOGY REPORTER

Unique and Conserved MicroRNAs in Wheat Chromosome 5D Revealed by Next-Generation Sequencing

(2013) Kuaybe Yucebilgili Kurtoglu et al.   PLoS One

The interaction between OsMADS57 and OsTB1 modulates rice tillering via DWARF14

(2013) Siyi Guo et al.   Nature Communications

On the complexity of miRNA-mediated regulation in plants: novel insights into the genomic organization of plant miRNAs

(2012) Moreno Colaiacovo et al.   Biology Direct

Identification of wild soybean miRNAs and their target genes responsive to aluminum stress

(2012) Qiao-Ying Zeng et al.   BMC PLANT BIOLOGY

Subgenomic analysis of microRNAs in polyploid wheat

(2012) Melda Kantar et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Identification and characterization of microRNAs from wheat (Triticum aestivum L.) under phosphorus deprivation

(2012) Xiaolei Zhao et al.   JOURNAL OF PLANT BIOCHEMISTRY AND BIOTECHNOLOGY

Analysis of the bread wheat genome using whole-genome shotgun sequencing

(2012) Rachel Brenchley et al.   NATURE

Auxin ControlsArabidopsisAdventitious Root Initiation by Regulating Jasmonic Acid Homeostasis

(2012) Laurent Gutierrez et al.   PLANT CELL

Uncovering Small RNA-Mediated Responses to Cold Stress in a Wheat Thermosensitive Genic Male-Sterile Line by Deep Sequencing

(2012) Z. Tang et al.   PLANT PHYSIOLOGY

MicroRNA Expression Analysis in the Cellulosic Biofuel Crop Switchgrass (Panicum virgatum) under Abiotic Stress

(2012) Guiling Sun et al.   PLoS One

Sorting the Wheat from the Chaff: Identifying miRNAs in Genomic Survey Sequences of Triticum aestivum Chromosome 1AL

(2012) Stuart J. Lucas et al.   PLoS One

Functions of microRNAs in plant stress responses

(2012) Ramanjulu Sunkar et al.   TRENDS IN PLANT SCIENCE

Deep sequencing analysis of the developing mouse brain reveals a novel microRNA

(2011) King-Hwa Ling et al.   BMC GENOMICS

Identification and characterization of wheat long non-protein coding RNAs responsive to powdery mildew infection and heat stress by using microarray analysis and SBS sequencing

(2011) Mingming Xin et al.   BMC PLANT BIOLOGY

High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis

(2011) N. W. Breakfield et al.   GENOME RESEARCH

miRanalyzer: an update on the detection and analysis of microRNAs in high-throughput sequencing experiments

(2011) M. Hackenberg et al.   NUCLEIC ACIDS RESEARCH

miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades

(2011) Marc R. Friedländer et al.   NUCLEIC ACIDS RESEARCH

Evolution and Functional Diversification ofMIRNAGenes

(2011) Josh T. Cuperus et al.   PLANT CELL

Massive Analysis of Rice Small RNAs: Mechanistic Implications of Regulated MicroRNAs and Variants for Differential Target RNA Cleavage

(2011) D.-H. Jeong et al.   PLANT CELL

TAPIR, a web server for the prediction of plant microRNA targets, including target mimics

(2010) Eric Bonnet et al.   BIOINFORMATICS

Identification and characterization of conserved microRNAs and their target genes in wheat (Triticum aestivum)

(2010) Z.J. Yin et al.   GENETICS AND MOLECULAR RESEARCH

miRBase: integrating microRNA annotation and deep-sequencing data

(2010) A. Kozomara et al.   NUCLEIC ACIDS RESEARCH

Deep sequencing reveals differential expression of microRNAs in favorable versus unfavorable neuroblastoma

(2010) Johannes H. Schulte et al.   NUCLEIC ACIDS RESEARCH

miR156-Targeted and Nontargeted SBP-Box Transcription Factors Act in Concert to Secure Male Fertility inArabidopsis

(2010) Shuping Xing et al.   PLANT CELL

MicroRNA Gene Evolution inArabidopsis lyrataandArabidopsis thaliana

(2010) Noah Fahlgren et al.   PLANT CELL

Ultra-Deep Sequencing Reveals the microRNA Expression Pattern of the Human Stomach

(2010) Ândrea Ribeiro-dos-Santos et al.   PLoS One

22-nucleotide RNAs trigger secondary siRNA biogenesis in plants

(2010) H.-M. Chen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

QuickGO: a web-based tool for Gene Ontology searching

(2009) D. Binns et al.   BIOINFORMATICS

HHMMiR: efficient de novo prediction of microRNAs using hierarchical hidden Markov models

(2009) Sabah Kadri et al.   BMC BIOINFORMATICS

Novel microRNAs uncovered by deep sequencing of small RNA transcriptomes in bread wheat (Triticum aestivum L.) and Brachypodium distachyon (L.) Beauv

(2009) Bo Wei et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Gene structures and processing of Arabidopsis thaliana HYL1-dependent pri-miRNAs

(2009) Bogna Szarzynska et al.   NUCLEIC ACIDS RESEARCH

PMRD: plant microRNA database

(2009) Zhenhai Zhang et al.   NUCLEIC ACIDS RESEARCH

miRanalyzer: a microRNA detection and analysis tool for next-generation sequencing experiments

(2009) Michael Hackenberg et al.   NUCLEIC ACIDS RESEARCH

Cold stress and acclimation - what is important for metabolic adjustment?

(2009) A. Janská et al.   PLANT BIOLOGY

Uncovering Small RNA-Mediated Responses to Phosphate Deficiency in Arabidopsis by Deep Sequencing

(2009) L.-C. Hsieh et al.   PLANT PHYSIOLOGY

Efficient mapping of Applied Biosystems SOLiD sequence data to a reference genome for functional genomic applications

(2008) Brian D. Ondov et al.   BIOINFORMATICS

Data mining for miRNAs and their targets in the Triticeae

(2008) Ani Dryanova et al.   GENOME

Identification and verification of microRNA in wheat (Triticum aestivum)

(2008) Weibo Jin et al.   JOURNAL OF PLANT RESEARCH

Discovering microRNAs from deep sequencing data using miRDeep

(2008) Marc R Friedländer et al.   NATURE BIOTECHNOLOGY

MicroRNA detection by northern blotting using locked nucleic acid probes

(2008) Éva Várallyay et al.   Nature Protocols

Relative abundance of Δ5-sterols in plasma membrane lipids of root-tip cells correlates with aluminum tolerance of rice

(2008) M. Shahadat Hossain Khan et al.   PHYSIOLOGIA PLANTARUM

Functional Characterization of DEAD-Box RNA Helicases in Arabidopsis thaliana under Abiotic Stress Conditions

(2008) Jin Sun Kim et al.   PLANT AND CELL PHYSIOLOGY

Structure and Functional Analysis of Wheat ICE (Inducer of CBF Expression) Genes

(2008) Mohamed Badawi et al.   PLANT AND CELL PHYSIOLOGY

Criteria for Annotation of Plant MicroRNAs

(2008) B. C. Meyers et al.   PLANT CELL

Dual coding of siRNAs and miRNAs by plant transposable elements

(2008) J. Piriyapongsa et al.   RNA

Differentiating Protein-Coding and Noncoding RNA: Challenges and Ambiguities

(2008) Marcel E. Dinger et al.   PLoS Computational Biology