Arabidopsis shoot stem cells display dynamic transcription and DNA methylation patterns

A gene expression map of shoot domains reveals regulatory mechanisms

(2019) Caihuan Tian et al.   Nature Communications

Extensive profiling in Arabidopsis reveals abundant polysome-associated 24-nt small RNAs including AGO5-dependent pseudogene-derived siRNAs

(2019) Antonin Marchais et al.   RNA

An essential role for abscisic acid in the regulation of xylem fibre differentiation

(2018) Liam Campbell et al.   DEVELOPMENT

Sexual-lineage-specific DNA methylation regulates meiosis in Arabidopsis

(2017) James Walker et al.   NATURE GENETICS

Predicting gene regulatory networks by combining spatial and temporal gene expression data inArabidopsisroot stem cells

(2017) Maria Angels de Luis Balaguer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Similarity between soybean andArabidopsisseed methylomes and loss of non-CG methylation does not affect seed development

(2017) Jer-Young Lin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Plant Transgenerational Epigenetics

(2016) Leandro Quadrana et al.   Annual Review of Genetics

Transposable elements: Self-seekers of the germline, team-players of the soma

(2016) David Haig   BIOESSAYS

Plant Stem Cells

(2016) Thomas Greb et al.   CURRENT BIOLOGY

Near-optimal probabilistic RNA-seq quantification

(2016) Nicolas L Bray et al.   NATURE BIOTECHNOLOGY

TEtranscripts: a package for including transposable elements in differential expression analysis of RNA-seq datasets

(2015) Ying Jin et al.   BIOINFORMATICS

The root cap: a short story of life and death

(2015) Robert P. Kumpf et al.   JOURNAL OF EXPERIMENTAL BOTANY

Functional and Genetic Analysis Identify a Role for Arabidopsis ARGONAUTE5 in Antiviral RNA Silencing

(2015) Chantal Brosseau et al.   PLANT CELL

Protocol: an improved and universal procedure for whole-mount immunolocalization in plants

(2015) Taras Pasternak et al.   Plant Methods

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Epigenetic regulation and functional exaptation of transposable elements in higher plants

(2014) Xiekui Cui et al.   CURRENT OPINION IN PLANT BIOLOGY

Meristem-specific expression of epigenetic regulators safeguards transposon silencing in Arabidopsis

(2014) T. Baubec et al.   EMBO REPORTS

Mechanism of DNA Methylation-Directed Histone Methylation by KRYPTONITE

(2014) Jiamu Du et al.   MOLECULAR CELL

Epigenetic reprogramming in plant sexual reproduction

(2014) Tomokazu Kawashima et al.   NATURE REVIEWS GENETICS

Epigenetic Regulation in Plants

(2014) C. S. Pikaard et al.   Cold Spring Harbor Perspectives in Biology

On the role of some ARGONAUTE proteins in meiosis and DNA repair in Arabidopsis thaliana

(2014) Cecilia Oliver et al.   Frontiers in Plant Science

The Arabidopsis Nucleosome Remodeler DDM1 Allows DNA Methyltransferases to Access H1-Containing Heterochromatin

(2013) Assaf Zemach et al.   CELL

Comprehensive Analysis of Silencing Mutants Reveals Complex Regulation of the Arabidopsis Methylome

(2013) Hume Stroud et al.   CELL

Reconstructing de novo silencing of an active plant retrotransposon

(2013) Arturo Marí-Ordóñez et al.   NATURE GENETICS

Large-scale gene function analysis with the PANTHER classification system

(2013) Huaiyu Mi et al.   Nature Protocols

DNA Methylation Dynamics during Sexual Reproduction in Arabidopsis thaliana

(2012) Pauline E. Jullien et al.   CURRENT BIOLOGY

Somatic small RNA pathways promote the mitotic events of megagametogenesis during female reproductive development in Arabidopsis

(2012) M. R. Tucker et al.   DEVELOPMENT

Metastable Differentially Methylated Regions within Arabidopsis Inbred Populations Are Associated with Modified Expression of Non-Coding Transcripts

(2012) Ericka R. Havecker et al.   PLoS One

Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications

(2011) Felix Krueger et al.   BIOINFORMATICS

Scale: a chemical approach for fluorescence imaging and reconstruction of transparent mouse brain

(2011) Hiroshi Hama et al.   NATURE NEUROSCIENCE

The bZIP Transcription Factor PERIANTHIA: A Multifunctional Hub for Meristem Control

(2011) Annette T. Maier et al.   Frontiers in Plant Science

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Control of female gamete formation by a small RNA pathway in Arabidopsis

(2010) Vianey Olmedo-Monfil et al.   NATURE

The Arabidopsis RNA-Directed DNA Methylation Argonautes Functionally Diverge Based on Their Expression and Interaction with Target Loci

(2010) E. R. Havecker et al.   PLANT CELL

Bursts of retrotransposition reproduced in Arabidopsis

(2009) Sayuri Tsukahara et al.   NATURE

Gene expression map of the Arabidopsis shoot apical meristem stem cell niche

(2009) R. K. Yadav et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Sorting of Small RNAs into Arabidopsis Argonaute Complexes Is Directed by the 5′ Terminal Nucleotide

(2008) Shijun Mi et al.   CELL

Vascular signalling mediated by ZWILLE potentiates WUSCHEL function during shoot meristem stem cell development in the Arabidopsis embryo

(2008) M. R. Tucker et al.   DEVELOPMENT

Global Characterization of Cell-Specific Gene Expression through Fluorescence-Activated Sorting of Nuclei

(2008) C. Zhang et al.   PLANT PHYSIOLOGY

Plant ARGONAUTES

(2008) Hervé Vaucheret   TRENDS IN PLANT SCIENCE