Deciphering the molecular adaptation of the king scallop (Pecten maximus) to heat stress using transcriptomics and proteomics

Key metabolic pathways involved in xenobiotic biotransformation and stress responses revealed by transcriptomics of the mangrove oyster Crassostrea brasiliana

(2015) Karim H. Lüchmann et al.   AQUATIC TOXICOLOGY

Proteomic responses to hypoxia at different temperatures in the great scallop (Pecten maximus)

(2015) Sébastien Artigaud et al.   PeerJ

Respiratory response to combined heat and hypoxia in the marine bivalves Pecten maximus and Mytilus spp.

(2014) Sébastien Artigaud et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY A-MOLECULAR & INTEGRATIVE PHYSIOLOGY

Deep transcriptome sequencing of Pecten maximus hemocytes: A genomic resource for bivalve immunology

(2014) Marianna Pauletto et al.   FISH & SHELLFISH IMMUNOLOGY

Proteomic-based comparison between populations of the Great Scallop, Pecten maximus

(2014) Sébastien Artigaud et al.   Journal of Proteomics

Deep sequencing of the mantle transcriptome of the great scallop Pecten maximus

(2014) Sébastien Artigaud et al.   Marine Genomics

Identifying differentially expressed proteins in two-dimensional electrophoresis experiments: inputs from transcriptomics statistical tools

(2013) S. Artigaud et al.   BIOINFORMATICS

Interactive effects of elevated temperature and CO2 levels on metabolism and oxidative stress in two common marine bivalves (Crassostrea virginica and Mercenaria mercenaria)

(2013) Omera B. Matoo et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY A-MOLECULAR & INTEGRATIVE PHYSIOLOGY

Sequencing-based gene network analysis provides a core set of gene resource for understanding thermal adaptation in Zhikong scallopChlamys farreri

(2013) X. Fu et al.   Molecular Ecology Resources

The Yeast Environmental Stress Response Regulates Mutagenesis Induced by Proteotoxic Stress

(2013) Erika Shor et al.   PLoS Genetics

Challenges for Biological Interpretation of Environmental Proteomics Data in Non-model Organisms

(2012) W. Wesley Dowd   INTEGRATIVE AND COMPARATIVE BIOLOGY

Environmental Proteomics of the Mussel Mytilus: Implications for Tolerance to Stress and Change in Limits of Biogeographic Ranges in Response to Climate Change

(2012) L. Tomanek   INTEGRATIVE AND COMPARATIVE BIOLOGY

The oyster genome reveals stress adaptation and complexity of shell formation

(2012) Guofan Zhang et al.   NATURE

STRING v9.1: protein-protein interaction networks, with increased coverage and integration

(2012) Andrea Franceschini et al.   NUCLEIC ACIDS RESEARCH

SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler

(2012) Ruibang Luo et al.   GigaScience

Identification and removal of ribosomal RNA sequences from metatranscriptomes

(2011) Robert Schmieder et al.   BIOINFORMATICS

GAPDH: A common enzyme with uncommon functions

(2011) Craig Nicholls et al.   CLINICAL AND EXPERIMENTAL PHARMACOLOGY AND PHYSIOLOGY

Diverse protective roles of the actin cytoskeleton during oxidative stress

(2011) Michelle E. Farah et al.   Cytoskeleton

Roles of tumor necrosis factor receptor associated factor 3 (TRAF3) and TRAF5 in immune cell functions

(2011) Joanne M. Hildebrand et al.   IMMUNOLOGICAL REVIEWS

Proteomic response to elevated PCO2 level in eastern oysters, Crassostrea virginica: evidence for oxidative stress

(2011) L. Tomanek et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Deep Sequencing of ESTs from Nacreous and Prismatic Layer Producing Tissues and a Screen for Novel Shell Formation-Related Genes in the Pearl Oyster

(2011) Shigeharu Kinoshita et al.   PLoS One

Environmental Proteomics: Changes in the Proteome of Marine Organisms in Response to Environmental Stress, Pollutants, Infection, Symbiosis, and Development

(2010) Lars Tomanek   Annual Review of Marine Science

Insights into shell deposition in the Antarctic bivalve Laternula elliptica: gene discovery in the mantle transcriptome using 454 pyrosequencing

(2010) Melody S Clark et al.   BMC GENOMICS

Transcriptome and proteome analysis of Pinctada margaritifera calcifying mantle and shell: focus on biomineralization

(2010) Caroline Joubert et al.   BMC GENOMICS

Transcriptomic responses to heat stress in invasive and native blue mussels (genus Mytilus): molecular correlates of invasive success

(2010) B. L. Lockwood et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

The physiology of climate change: how potentials for acclimatization and genetic adaptation will determine 'winners' and 'losers'

(2010) G. N. Somero   JOURNAL OF EXPERIMENTAL BIOLOGY

Transcriptional response to heat stress in the Antarctic bivalve Laternula elliptica

(2010) Manuela Truebano et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

Heat shock proteins (chaperones) in fish and shellfish and their potential role in relation to fish health: a review

(2010) R J Roberts et al.   JOURNAL OF FISH DISEASES

Triggers of the HSP70 stress response: environmental responses and laboratory manipulation in an Antarctic marine invertebrate (Nacella concinna)

(2009) Melody S. Clark et al.   CELL STRESS & CHAPERONES

Acquisition of thermotolerance in bay scallops, Argopecten irradians irradians, via differential induction of heat shock proteins

(2009) Nicole T. Brun et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

Transcriptome Profiling of Selectively Bred Pacific Oyster Crassostrea gigas Families that Differ in Tolerance of Heat Shock

(2009) R. Paul Lang et al.   MARINE BIOTECHNOLOGY

HSP70 heat shock proteins and environmental stress in Antarctic marine organisms: A mini-review

(2009) Melody S. Clark et al.   Marine Genomics

Glycolytic Flux Signals to mTOR through Glyceraldehyde-3-Phosphate Dehydrogenase-Mediated Regulation of Rheb

(2009) M. N. Lee et al.   MOLECULAR AND CELLULAR BIOLOGY

Parallel Evolution of Nacre Building Gene Sets in Molluscs

(2009) Daniel J. Jackson et al.   MOLECULAR BIOLOGY AND EVOLUTION

Fish proteome analysis: Model organisms and non-sequenced species

(2009) Ignasi Forné et al.   PROTEOMICS

Effects of elevated temperature and cadmium exposure on stress protein response in eastern oysters Crassostrea virginica (Gmelin)

(2008) A.V. Ivanina et al.   AQUATIC TOXICOLOGY

Rhythms of Gene Expression in a Fluctuating Intertidal Environment

(2008) Andrew Y. Gracey et al.   CURRENT BIOLOGY

Heat shock protein responses in thermally stressed bay scallops, Argopecten irradians, and sea scallops, Placopecten magellanicus

(2008) Nicole T. Brun et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

Attributing physical and biological impacts to anthropogenic climate change

(2008) Cynthia Rosenzweig et al.   NATURE

Activation of innate immunity system during aging: NF-kB signaling is the molecular culprit of inflamm-aging

(2007) Antero Salminen et al.   AGEING RESEARCH REVIEWS