Genetic signatures of adaptation revealed from transcriptome sequencing of Arctic and red foxes
出版年份 2015 全文链接
标题
Genetic signatures of adaptation revealed from transcriptome sequencing of Arctic and red foxes
作者
关键词
Arctic fox, <em class=EmphasisTypeItalic >Vulpes lagopus</em>, Red fox, <em class=EmphasisTypeItalic >Vulpes vulpes</em>, Transcriptome, Positive selection, Arctic adaptation
出版物
BMC GENOMICS
Volume 16, Issue 1, Pages -
出版商
Springer Nature
发表日期
2015-08-06
DOI
10.1186/s12864-015-1724-9
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- The transcriptome of the bowhead whale Balaena mysticetus reveals adaptations of the longest-lived mammal
- (2016) Inge Seim et al. Aging-US
- Naked but Not Hairless: The Pitfalls of Analyses of Molecular Adaptation Based on Few Genome Sequence Comparisons
- (2015) Frédéric Delsuc et al. Genome Biology and Evolution
- Convergent evolution of the genomes of marine mammals
- (2015) Andrew D Foote et al. NATURE GENETICS
- Population Genomics Reveal Recent Speciation and Rapid Evolutionary Adaptation in Polar Bears
- (2014) Shiping Liu et al. CELL
- Range-wide multilocus phylogeography of the red fox reveals ancient continental divergence, minimal genomic exchange and distinct demographic histories
- (2014) Mark J. Statham et al. MOLECULAR ECOLOGY
- A range-wide synthesis and timeline for phylogeographic events in the red fox (Vulpes vulpes)
- (2013) Verena E Kutschera et al. BMC EVOLUTIONARY BIOLOGY
- The Branch-Site Test of Positive Selection Is Surprisingly Robust but Lacks Power under Synonymous Substitution Saturation and Variation in GC
- (2013) Walid H. Gharib et al. MOLECULAR BIOLOGY AND EVOLUTION
- Molecular and clinical characterization of the myopathic form of mitochondrial DNA depletion syndrome caused by mutations in the thymidine kinase (TK2) gene
- (2013) Sirisak Chanprasert et al. MOLECULAR GENETICS AND METABOLISM
- Systematic evaluation of spliced alignment programs for RNA-seq data
- (2013) Pär G Engström et al. NATURE METHODS
- The genetic causes of convergent evolution
- (2013) David L. Stern NATURE REVIEWS GENETICS
- STAR: ultrafast universal RNA-seq aligner
- (2012) Alexander Dobin et al. BIOINFORMATICS
- Cutoffs and k-mers: implications from a transcriptome study in allopolyploid plants
- (2012) Nicole Gruenheit et al. BMC GENOMICS
- Identification of differentially expressed genes and pathways for intramuscular fat deposition in pectoralis major tissues of fast-and slow-growing chickens
- (2012) Huan-Xian Cui et al. BMC GENOMICS
- The RGD finger of Del-1 is a unique structural feature critical for integrin binding
- (2012) Thomas Schürpf et al. FASEB JOURNAL
- V-AKT murine thymoma viral oncogene homolog/mammalian target of rapamycin activation induces a module of metabolic changes contributing to growth in insulin-induced hepatocarcinogenesis
- (2012) Matthias Evert et al. HEPATOLOGY
- Streaming fragment assignment for real-time analysis of sequencing experiments
- (2012) Adam Roberts et al. NATURE METHODS
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- Kretzoiarctos gen. nov., the Oldest Member of the Giant Panda Clade
- (2012) Juan Abella et al. PLoS One
- Transcriptome Sequencing and Annotation for the Jamaican Fruit Bat (Artibeus jamaicensis)
- (2012) Timothy I. Shaw et al. PLoS One
- Nuclear Genomic Sequences Reveal that Polar Bears Are an Old and Distinct Bear Lineage
- (2012) F. Hailer et al. SCIENCE
- Protein Interactions among Fe65, the Low-Density Lipoprotein Receptor-Related Protein, and the Amyloid Precursor Protein
- (2011) Melinda M. Mulvihill et al. BIOCHEMISTRY
- The variant call format and VCFtools
- (2011) P. Danecek et al. BIOINFORMATICS
- Optimizing de novo transcriptome assembly from short-read RNA-Seq data: a comparative study
- (2011) Qiong-Yi Zhao et al. BMC BIOINFORMATICS
- Proteinortho: Detection of (Co-)orthologs in large-scale analysis
- (2011) Marcus Lechner et al. BMC BIOINFORMATICS
- Sequence comparison of prefrontal cortical brain transcriptome from a tame and an aggressive silver fox (Vulpes vulpes)
- (2011) Anna V Kukekova et al. BMC GENOMICS
- The Effects of Alignment Error and Alignment Filtering on the Sitewise Detection of Positive Selection
- (2011) G. Jordan et al. MOLECULAR BIOLOGY AND EVOLUTION
- Full-length transcriptome assembly from RNA-Seq data without a reference genome
- (2011) Manfred G Grabherr et al. NATURE BIOTECHNOLOGY
- Global Gene Expression Analysis of Murine Limb Development
- (2011) Leila Taher et al. PLoS One
- The real cost of sequencing: higher than you think!
- (2011) Andrea Sboner et al. GENOME BIOLOGY
- Normalization of genomic DNA using duplex-specific nuclease
- (2010) Irina Shagina et al. BIOTECHNIQUES
- The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
- (2010) A. McKenna et al. GENOME RESEARCH
- A Genome-wide Survey of the Prevalence and Evolutionary Forces Acting on Human Nonsense SNPs
- (2009) Bryndis Yngvadottir et al. AMERICAN JOURNAL OF HUMAN GENETICS
- TagDust--a program to eliminate artifacts from next generation sequencing data
- (2009) T. Lassmann et al. BIOINFORMATICS
- VarScan: variant detection in massively parallel sequencing of individual and pooled samples
- (2009) Daniel C. Koboldt et al. BIOINFORMATICS
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- DnaSP v5: a software for comprehensive analysis of DNA polymorphism data
- (2009) P. Librado et al. BIOINFORMATICS
- BLAST+: architecture and applications
- (2009) Christiam Camacho et al. BMC BIOINFORMATICS
- Estimates of Positive Darwinian Selection Are Inflated by Errors in Sequencing, Annotation, and Alignment
- (2009) Adrian Schneider et al. Genome Biology and Evolution
- A novel missense mutation in theSLC6A19gene in a Chinese family with Hartnup disorder
- (2009) Yanhong Zheng et al. INTERNATIONAL JOURNAL OF DERMATOLOGY
- The evolution of South American endemic canids: a history of rapid diversification and morphological parallelism
- (2009) F. A. PERINI et al. JOURNAL OF EVOLUTIONARY BIOLOGY
- SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building
- (2009) M. Gouy et al. MOLECULAR BIOLOGY AND EVOLUTION
- Gnathostome Phylogenomics Utilizing Lungfish EST Sequences
- (2008) B. M. Hallstrom et al. MOLECULAR BIOLOGY AND EVOLUTION
- Phylogenetic analysis of 1.5 Mbp and platypus EST data refute the Marsupionta hypothesis and unequivocally support Monotremata as sister group to Marsupialia/Placentalia
- (2008) Morgan Kullberg et al. ZOOLOGICA SCRIPTA
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