Comparative transcriptome study of switchgrass (Panicum virgatum L.) homologous autopolyploid and its parental amphidiploid responding to consistent drought stress

Autopolyploidization in switchgrass alters phenotype and flowering time via epigenetic and transcription regulation

(2019) Haidong Yan et al.   JOURNAL OF EXPERIMENTAL BOTANY

Genetic Contribution of Paleopolyploidy to Adaptive Evolution in Angiosperms

(2019) Shengdan Wu et al.   Molecular Plant

Roles of Chloroplast Retrograde Signals and Ion Transport in Plant Drought Tolerance

(2018) Chenchen Zhao et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

psRNATarget: a plant small RNA target analysis server (2017 release)

(2018) Xinbin Dai et al.   NUCLEIC ACIDS RESEARCH

Knockdown of Rice MicroRNA166 Confers Drought Resistance by Causing Leaf Rolling and Altering Stem Xylem Development

(2018) Jinshan Zhang et al.   PLANT PHYSIOLOGY

Genome-Wide Analysis of Gene and microRNA Expression in Diploid and Autotetraploid Paulownia fortunei (Seem) Hemsl. under Drought Stress by Transcriptome, microRNA, and Degradome Sequencing

(2018) Zhenli Zhao et al.   Forests

Effective polyploidy causes phenotypic delay and influences bacterial evolvability

(2018) Lei Sun et al.   PLOS BIOLOGY

Antioxidant enzymes changes in response to drought stress in ten cultivars of oilseed rape (Brassica napus L.)

(2018) T. Abedi et al.   Czech Journal of Genetics and Plant Breeding

Simultaneous regulation of F5H in COMT-RNAi transgenic switchgrass alters effects of COMT suppression on syringyl lignin biosynthesis

(2018) Zhenying Wu et al.   PLANT BIOTECHNOLOGY JOURNAL

Combinations of Small RNA, RNA, and Degradome Sequencing Uncovers the Expression Pattern of microRNA–mRNA Pairs Adapting to Drought Stress in Leaf and Root of Dactylis glomerata L.

(2018) Yang Ji et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Enhanced ROS scavenging and sugar accumulation contribute to drought tolerance of naturally occurring autotetraploids in Poncirus trifoliata

(2018) Tonglu Wei et al.   PLANT BIOTECHNOLOGY JOURNAL

The evolutionary significance of polyploidy

(2017) Yves Van de Peer et al.   NATURE REVIEWS GENETICS

microRNAs contribute to enhanced salt adaptation of the autopolyploid Hordeum bulbosum compared with its diploid ancestor

(2017) Beibei Liu et al.   PLANT JOURNAL

MicroRNA156 improves drought stress tolerance in alfalfa ( Medicago sativa ) by silencing SPL13

(2017) Muhammad Arshad et al.   PLANT SCIENCE

Expression Profiling of Ribosomal Protein Gene Family in Dehydration Stress Responses and Characterization of Transgenic Rice Plants Overexpressing RPL23A for Water-Use Efficiency and Tolerance to Drought and Salt Stresses

(2017) Mazahar Moin et al.   Frontiers in Chemistry

Expansion of Signal Transduction Pathways in Fungi by Extensive Genome Duplication

(2016) Luis M. Corrochano et al.   CURRENT BIOLOGY

Tetraploidy enhances the ability to exclude chloride from leaves in carrizo citrange seedlings

(2016) M. Ruiz et al.   JOURNAL OF PLANT PHYSIOLOGY

Influence of extreme weather disasters on global crop production

(2016) Corey Lesk et al.   NATURE

miRNA-based drought regulation in wheat

(2015) Guray Akdogan et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

PacCYP707A2 negatively regulates cherry fruit ripening while PacCYP707A1 mediates drought tolerance

(2015) Qian Li et al.   JOURNAL OF EXPERIMENTAL BOTANY

A Role for Arabidopsis miR399f in Salt, Drought, and ABA Signaling

(2015)   MOLECULES AND CELLS

Transgenic tomato overexpressing ath-miR399d improves growth under abiotic stress conditions

(2015) N. Gao et al.   RUSSIAN JOURNAL OF PLANT PHYSIOLOGY

Unprecedented 21st century drought risk in the American Southwest and Central Plains

(2015) B. I. Cook et al.   Science Advances

Feedstock loss from drought is a major economic risk for biofuel producers

(2014) William R. Morrow et al.   BIOMASS & BIOENERGY

Polyploidy in the Arabidopsis genus

(2014) Kirsten Bomblies et al.   CHROMOSOME RESEARCH

Genome-wide analysis of Water-stress-responsive microRNA expression profile in tobacco roots

(2014) Fuqiang Yin et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Nitrogen and harvest effects on soil properties under rainfed switchgrass and no-till corn over 9 years: implications for soil quality

(2014) Catherine E. Stewart et al.   Global Change Biology Bioenergy

Different drought-stress responses in photosynthesis and reactive oxygen metabolism between autotetraploid and diploid rice

(2014) P. -M. Yang et al.   PHOTOSYNTHETICA

Differential sRNA Regulation in Leaves and Roots of Sugarcane under Water Depletion

(2014) Flávia Thiebaut et al.   PLoS One

Greater Sensitivity to Drought Accompanies Maize Yield Increase in the U.S. Midwest

(2014) D. B. Lobell et al.   SCIENCE

Production of Autopolyploid Lowland Switchgrass Lines Through In Vitro Chromosome Doubling

(2013) Zhiyong Yang et al.   BioEnergy Research

Rise and Persistence of Animal Polyploidy: Evolutionary Constraints and Potential

(2013) L. Choleva et al.   CYTOGENETIC AND GENOME RESEARCH

Physiological and Proteomic Responses of Diploid and Tetraploid Black Locust (Robinia pseudoacacia L.) Subjected to Salt Stress

(2013) Zhiming Wang et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Hydrogen Sulfide Improves Drought Tolerance in Arabidopsis thaliana by MicroRNA Expressions

(2013) Jiejie Shen et al.   PLoS One

Polyploids Exhibit Higher Potassium Uptake and Salinity Tolerance in Arabidopsis

(2013) D.-Y. Chao et al.   SCIENCE

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

Genome and gene duplications and gene expression divergence: a view from plants

(2012) Yupeng Wang et al.   Annals of the New York Academy of Sciences

miREvo: an integrative microRNA evolutionary analysis platform for next-generation sequencing experiments

(2012) Ming Wen et al.   BMC BIOINFORMATICS

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

Polyploidy enhances the occupation of heterogeneous environments through hydraulic related trade-offs inAtriplex canescens(Chenopodiaceae)

(2012) Guang-You Hao et al.   NEW PHYTOLOGIST

Bioinformatic Analysis of Epigenetic and MicroRNA Mediated Regulation of Drought Responsive Genes in Rice

(2012) Rafi Shaik et al.   PLoS One

Heme Synthesis by Plastid Ferrochelatase I Regulates Nuclear Gene Expression in Plants

(2011) Jesse D. Woodson et al.   CURRENT BIOLOGY

Wheat Hybridization and Polyploidization Results in Deregulation of Small RNAs

(2011) Michal Kenan-Eichler et al.   GENETICS

Lettuce Costunolide Synthase (CYP71BL2) and Its Homolog (CYP71BL1) from Sunflower Catalyze Distinct Regio- and Stereoselective Hydroxylations in Sesquiterpene Lactone Metabolism

(2011) Nobuhiro Ikezawa et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The role of the miR399-PHO2 module in the regulation of flowering time in response to different ambient temperatures in Arabidopsis thaliana

(2011) Wanhui Kim et al.   MOLECULES AND CELLS

miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades

(2011) Marc R. Friedländer et al.   NUCLEIC ACIDS RESEARCH

Evidence for a SAL1-PAP Chloroplast Retrograde Pathway That Functions in Drought and High Light Signaling inArabidopsis

(2011) Gonzalo M. Estavillo et al.   PLANT CELL

Integrated Profiling of MicroRNAs and mRNAs: MicroRNAs Located on Xq27.3 Associate with Clear Cell Renal Cell Carcinoma

(2011) Liang Zhou et al.   PLoS One

Influence of ploidy level on morphology, growth and drought susceptibility in Spathiphyllum wallisii

(2010) Katrijn Van Laere et al.   ACTA PHYSIOLOGIAE PLANTARUM

Regulation of mRNA Translation and Stability by microRNAs

(2010) Marc Robert Fabian et al.   Annual Review of Biochemistry

Insights from the Comparison of Plant Genome Sequences

(2010) Andrew H. Paterson et al.   Annual Review of Plant Biology

Over-expression of microRNA169 confers enhanced drought tolerance to tomato

(2010) Xiaohui Zhang et al.   BIOTECHNOLOGY LETTERS

Evolutionary consequences of autopolyploidy

(2010) Christian Parisod et al.   NEW PHYTOLOGIST

miRNA expression patterns of Triticum dicoccoides in response to shock drought stress

(2010) Melda Kantar et al.   PLANTA

Effect of drought on chlorophyll content and antioxidant enzyme activities in leaves of three wheat cultivars varying in productivity

(2010) M. K. Nikolaeva et al.   RUSSIAN JOURNAL OF PLANT PHYSIOLOGY

Nutrient Uptake by ‘Alamo’ Switchgrass Used as an Energy Crop

(2009) Rocky Lemus et al.   BioEnergy Research

MicroRNAs: Target Recognition and Regulatory Functions

(2009) David P. Bartel   CELL

Differentially Expressed miRNAs Potentially Involved in the Regulation of Defense Mechanism to Drought Stress in Maize Seedlings

(2009) Liya Wei et al.   INTERNATIONAL JOURNAL OF PLANT SCIENCES

Analysis of antioxidant enzyme activity during germination of alfalfa under salt and drought stresses

(2009) Wen-Bin Wang et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

miR398 and miR408 are up-regulated in response to water deficit in Medicago truncatula

(2009) Inês Trindade et al.   PLANTA

Small RNAs serve as a genetic buffer against genomic shock in Arabidopsis interspecific hybrids and allopolyploids

(2009) M. Ha et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Photosynthesis under drought and salt stress: regulation mechanisms from whole plant to cell

(2008) M. M. Chaves et al.   ANNALS OF BOTANY

Differential regulation of proteins and phosphoproteins in rice under drought stress

(2008) Yuqin Ke et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays

(2008) J. C. Marioni et al.   GENOME RESEARCH

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS

Heme, a Plastid-Derived Regulator of Nuclear Gene Expression in Chlamydomonas

(2008) E. D. von Gromoff et al.   PLANT CELL

The nucleotidase/phosphatase SAL1 is a negative regulator of drought tolerance in Arabidopsis

(2008) Pip B. Wilson et al.   PLANT JOURNAL