Simultaneous transcriptional profiling of Leishmania major and its murine macrophage host cell reveals insights into host-pathogen interactions

Leishmania survival in the macrophage: where the ends justify the means

(2015) Guillermo Arango Duque et al.   CURRENT OPINION IN MICROBIOLOGY

Mitosis, microtubule dynamics and the evolution of kinesins

(2015) Juan Jesus Vicente et al.   EXPERIMENTAL CELL RESEARCH

Genomic Profiling of Human Leishmania braziliensis Lesions Identifies Transcriptional Modules Associated with Cutaneous Immunopathology

(2015) Fernanda O. Novais et al.   JOURNAL OF INVESTIGATIVE DERMATOLOGY

The generation of macrophages with anti-inflammatory activity in the absence of STAT6 signaling

(2015) Bryan D. Fleming et al.   JOURNAL OF LEUKOCYTE BIOLOGY

Long-Term Relationships: the Complicated Interplay between the Host and the Developmental Stages of Toxoplasma gondii during Acute and Chronic Infections

(2015) Kelly J. Pittman et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Transcriptomic profiling of gene expression and RNA processing duringLeishmania majordifferentiation

(2015) Laura A. L. Dillon et al.   NUCLEIC ACIDS RESEARCH

Molecular Chaperones ofLeishmania: Central Players in Many Stress-Related and -Unrelated Physiological Processes

(2015) Jose M. Requena et al.   Biomed Research International

Immune Evasion Strategies ofTrypanosoma cruzi

(2015) Ana Flávia Nardy et al.   Journal of Immunology Research

Subversion of Cell-Autonomous Immunity and Cell Migration by Legionella pneumophila Effectors

(2015) Sylvia Simon et al.   Frontiers in Immunology

Targeting of a Fixed Bacterial Immunogen to Fc Receptors Reverses the Anti-Inflammatory Properties of the Gram-Negative Bacterium, Francisella tularensis, during the Early Stages of Infection

(2015) Zulfia Babadjanova et al.   PLoS One

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

No stress – Hsp90 and signal transduction in Leishmania

(2014) A. HOMBACH et al.   PARASITOLOGY

Uncovering the components of the Francisella tularensis virulence stealth strategy

(2014) Bradley D. Jones et al.   Frontiers in Cellular and Infection Microbiology

voom: precision weights unlock linear model analysis tools for RNA-seq read counts

(2014) Charity W Law et al.   GENOME BIOLOGY

Leishmania panamensis infection and antimonial drugs modulate expression of macrophage drug transporters and metabolizing enzymes: impact on intracellular parasite survival

(2013) Maria Adelaida Gómez et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Succinate is an inflammatory signal that induces IL-1β through HIF-1α

(2013) G. M. Tannahill et al.   NATURE

Count-based differential expression analysis of RNA sequencing data using R and Bioconductor

(2013) Simon Anders et al.   Nature Protocols

Identification of a Secreted Casein Kinase 1 in Leishmania donovani: Effect of Protein over Expression on Parasite Growth and Virulence

(2013) Mary Dan-Goor et al.   PLoS One

Lipid synthesis in protozoan parasites: A comparison between kinetoplastids and apicomplexans

(2013) Srinivasan Ramakrishnan et al.   PROGRESS IN LIPID RESEARCH

Calmodulin is Required for Paraflagellar Rod Assembly and Flagellum-Cell Body Attachment in Trypanosomes

(2013) Michael L. Ginger et al.   PROTIST

Evolutionary and functional insights into Leishmania META1: evidence for lateral gene transfer and a role for META1 in secretion

(2012) Vidhi Puri et al.   BMC EVOLUTIONARY BIOLOGY

A comparison of two distinct murine macrophage gene expression profiles in response to Leishmania amazonensis infection

(2012) Christian M Probst et al.   BMC MICROBIOLOGY

Infection of neutrophil granulocytes with Leishmania major activates ERK 1/2 and modulates multiple apoptotic pathways to inhibit apoptosis

(2012) Arup Sarkar et al.   MEDICAL MICROBIOLOGY AND IMMUNOLOGY

Leishmania virulence factors: focus on the metalloprotease GP63

(2012) Martin Olivier et al.   MICROBES AND INFECTION

Leishmaniasis Worldwide and Global Estimates of Its Incidence

(2012) Jorge Alvar et al.   PLoS One

Distinct Transcriptional Signatures of Bone Marrow-Derived C57BL/6 and DBA/2 Dendritic Leucocytes Hosting Live Leishmania amazonensis Amastigotes

(2012) Emilie Giraud et al.   PLoS Neglected Tropical Diseases

Transcriptomic Signature of Leishmania Infected Mice Macrophages: A Metabolic Point of View

(2012) Imen Rabhi et al.   PLoS Neglected Tropical Diseases

Morphological Events during the Cell Cycle of Leishmania major

(2011) Audrey Ambit et al.   EUKARYOTIC CELL

Sphingolipid Degradation by Leishmania major Is Required for Its Resistance to Acidic pH in the Mammalian Host

(2011) Wei Xu et al.   INFECTION AND IMMUNITY

Leishmaniasis: complexity at the host–pathogen interface

(2011) Paul Kaye et al.   NATURE REVIEWS MICROBIOLOGY

Multiple levels of gene regulation mediate differentiation of the intracellular pathogen Leishmania

(2010) T. Lahav et al.   FASEB JOURNAL

The cell cycle of Leishmania: morphogenetic events and their implications for parasite biology

(2010) Richard J. Wheeler et al.   MOLECULAR MICROBIOLOGY

Tackling the widespread and critical impact of batch effects in high-throughput data

(2010) Jeffrey T. Leek et al.   NATURE REVIEWS GENETICS

ConsensusPathDB: toward a more complete picture of cell biology

(2010) Atanas Kamburov et al.   NUCLEIC ACIDS RESEARCH

Gene ontology analysis for RNA-seq: accounting for selection bias

(2010) Matthew D Young et al.   GENOME BIOLOGY

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

Transcriptional signatures of BALB/c mouse macrophages housing multiplying Leishmania amazonensis amastigotes

(2009) Jose Osorio y Fortea et al.   BMC GENOMICS

Whole-genome comparative RNA expression profiling of axenic and intracellular amastigote forms of Leishmania infantum

(2009) Annie Rochette et al.   MOLECULAR AND BIOCHEMICAL PARASITOLOGY

Comparative Expression Profiling of Leishmania: Modulation in Gene Expression between Species and in Different Host Genetic Backgrounds

(2009) Daniel P. Depledge et al.   PLoS Neglected Tropical Diseases

Genome-wide gene expression profiling analysis of Leishmania major and Leishmania infantum developmental stages reveals substantial differences between the two species

(2008) Annie Rochette et al.   BMC GENOMICS

Crucial role of cytosolic tryparedoxin peroxidase in Leishmania donovani survival, drug response and virulence

(2008) Jitesh P. Iyer et al.   MOLECULAR MICROBIOLOGY

In Vivo Imaging Reveals an Essential Role for Neutrophils in Leishmaniasis Transmitted by Sand Flies

(2008) N. C. Peters et al.   SCIENCE

Macrophage and T-Cell Gene Expression in a Model of Early Infection with the Protozoan Leishmania chagasi

(2008) Nicholas A. Ettinger et al.   PLoS Neglected Tropical Diseases