Genome-wide target analysis of NEUROD2 provides new insights into regulation of cortical projection neuron migration and differentiation

The selection and function of cell type-specific enhancers

(2015) Sven Heinz et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

MEF2D Drives Photoreceptor Development through a Genome-wide Competition for Tissue-Specific Enhancers

(2015) Milena M. Andzelm et al.   NEURON

Genomic Perspectives of Transcriptional Regulation in Forebrain Development

(2015) Alex S. Nord et al.   NEURON

Neurogenins in brain development and disease: An overview

(2014) Liqun Yuan et al.   ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS

Cux1andCux2selectively target basal and apical dendritic compartments of layer II-III cortical neurons

(2014) Beatriz Cubelos et al.   Developmental Neurobiology

Regulatory analysis of the C. elegans genome with spatiotemporal resolution

(2014) Carlos L. Araya et al.   NATURE

The UCSC Genome Browser database: 2015 update

(2014) Kate R. Rosenbloom et al.   NUCLEIC ACIDS RESEARCH

Phosphorylation of Drebrin by Cyclin-Dependent Kinase 5 and Its Role in Neuronal Migration

(2014) Kazuya Tanabe et al.   PLoS One

Neuronal Basic Helix-Loop-Helix Proteins Neurod2/6 Regulate Cortical Commissure Formation before Midline Interactions

(2013) I. Bormuth et al.   JOURNAL OF NEUROSCIENCE

Chromatin connectivity maps reveal dynamic promoter–enhancer long-range associations

(2013) Yubo Zhang et al.   NATURE

Molecular logic of neocortical projection neuron specification, development and diversity

(2013) Luciano Custo Greig et al.   NATURE REVIEWS NEUROSCIENCE

In and out from the cortex: Development of major forebrain connections

(2013) E. Leyva-Díaz et al.   NEUROSCIENCE

Proneural genes in neocortical development

(2013) G. Wilkinson et al.   NEUROSCIENCE

Assessing Computational Methods for Transcription Factor Target Gene Identification Based on ChIP-seq Data

(2013) Weronika Sikora-Wohlfeld et al.   PLoS Computational Biology

Cell-type specificity of ChIP-predicted transcription factor binding sites

(2012) Tony Håndstad et al.   BMC GENOMICS

Transcriptional co-regulation of neuronal migration and laminar identity in the neocortex

(2012) K. Y. Kwan et al.   DEVELOPMENT

Genetic and Epigenetic Determinants of Neurogenesis and Myogenesis

(2012) Abraham P. Fong et al.   DEVELOPMENTAL CELL

An integrated encyclopedia of DNA elements in the human genome

(2012)   NATURE

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Transcription factors: from enhancer binding to developmental control

(2012) François Spitz et al.   NATURE REVIEWS GENETICS

NeuroD2 regulates the development of hippocampal mossy fiber synapses

(2012) Scott A Wilke et al.   Neural Development

MEME-ChIP: motif analysis of large DNA datasets

(2011) Philip Machanick et al.   BIOINFORMATICS

Sclerotome-derived Slit1 drives directional migration and differentiation of Robo2-expressing pioneer myoblasts

(2011) O. Halperin-Barlev et al.   DEVELOPMENT

Tbr1 and Fezf2 Regulate Alternate Corticofugal Neuronal Identities during Neocortical Development

(2011) W. L. McKenna et al.   JOURNAL OF NEUROSCIENCE

Transcriptional programs in transient embryonic zones of the cerebral cortex defined by high-resolution mRNA sequencing

(2011) A. E. Ayoub et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cux1 and Cux2 Regulate Dendritic Branching, Spine Morphology, and Synapses of the Upper Layer Neurons of the Cortex

(2010) Beatriz Cubelos et al.   NEURON

Regulation of Process Retraction and Cell Migration by EphA3 Is Mediated by the Adaptor Protein Nck1

(2009) Tianjing Hu et al.   BIOCHEMISTRY

GABAergic Differentiation Induced by Mash1 Is Compromised by the bHLH Proteins Neurogenin2, NeuroD1, and NeuroD2

(2009) Laurent Roybon et al.   CEREBRAL CORTEX

Molecular regulation of neuronal migration during neocortical development

(2009) Zhen Huang   MOLECULAR AND CELLULAR NEUROSCIENCE

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

The determination of projection neuron identity in the developing cerebral cortex

(2008) Dino P Leone et al.   CURRENT OPINION IN NEUROBIOLOGY

Plexin-A2 and its ligand, Sema6A, control nucleus-centrosome coupling in migrating granule cells

(2008) Julie Renaud et al.   NATURE NEUROSCIENCE

Satb2 Is a Postmitotic Determinant for Upper-Layer Neuron Specification in the Neocortex

(2008) Olga Britanova et al.   NEURON

Satb2 Regulates Callosal Projection Neuron Identity in the Developing Cerebral Cortex

(2008) Elizabeth A. Alcamo et al.   NEURON

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

(2008) Da Wei Huang et al.   NUCLEIC ACIDS RESEARCH

The Fezf2-Ctip2 genetic pathway regulates the fate choice of subcortical projection neurons in the developing cerebral cortex

(2008) B. Chen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Model-based Analysis of ChIP-Seq (MACS)

(2008) Yong Zhang et al.   GENOME BIOLOGY

Crystal Structure of E47−NeuroD1/Beta2 bHLH Domain−DNA Complex:  Heterodimer Selectivity and DNA Recognition†,‡

(2007) Antonella Longo et al.   BIOCHEMISTRY