The complete methylome of Helicobacter pylori UM032

Beyond DnaA: The Role of DNA Topology and DNA Methylation in Bacterial Replication Initiation

(2014) Rafał Donczew et al.   JOURNAL OF MOLECULAR BIOLOGY

Methylome Diversification through Changes in DNA Methyltransferase Sequence Specificity

(2014) Yoshikazu Furuta et al.   PLoS Genetics

Characterization of Helicobacter pylori Bacteriophage KHP30

(2013) Jumpei Uchiyama et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Programmed Heterogeneity: Epigenetic Mechanisms in Bacteria

(2013) Josep Casadesús et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data

(2013) Chen-Shan Chin et al.   NATURE METHODS

Type I restriction enzymes and their relatives

(2013) W. A. M. Loenen et al.   NUCLEIC ACIDS RESEARCH

The complex methylome of the human gastric pathogen Helicobacter pylori

(2013) Juliane Krebes et al.   NUCLEIC ACIDS RESEARCH

To be or not to be: regulation of restriction–modification systems and other toxin–antitoxin systems

(2013) Iwona Mruk et al.   NUCLEIC ACIDS RESEARCH

Choosing a Benchtop Sequencing Machine to Characterise Helicobacter pylori Genomes

(2013) Timothy T. Perkins et al.   PLoS One

Comparing the genomes of Helicobacter pylori clinical strain UM032 and Mice-adapted derivatives

(2013) Yalda Khosravi et al.   Gut Pathogens

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

A tale of three next generation sequencing platforms: comparison of Ion torrent, pacific biosciences and illumina MiSeq sequencers

(2012) Michael Quail et al.   BMC GENOMICS

Modeling kinetic rate variation in third generation DNA sequencing data to detect putative modifications to DNA bases

(2012) E. E. Schadt et al.   GENOME RESEARCH

Genome, Integration, and Transduction of a Novel Temperate Phage of Helicobacter pylori

(2012) Cheng-Hung Luo et al.   JOURNAL OF VIROLOGY

Hybrid error correction and de novo assembly of single-molecule sequencing reads

(2012) Sergey Koren et al.   NATURE BIOTECHNOLOGY

Genome-wide mapping of methylated adenine residues in pathogenic Escherichia coli using single-molecule real-time sequencing

(2012) Gang Fang et al.   NATURE BIOTECHNOLOGY

The methylomes of six bacteria

(2012) Iain A. Murray et al.   NUCLEIC ACIDS RESEARCH

Genomics of DNA cytosine methylation in Escherichia coli reveals its role in stationary phase transcription

(2012) Christina Kahramanoglou et al.   Nature Communications

Innate and adaptive immunity in bacteria: mechanisms of programmed genetic variation to fight bacteriophages

(2011) David Bikard et al.   CURRENT OPINION IN IMMUNOLOGY

Deletion of One Nucleotide within the Homonucleotide Tract Present in the hsdS Gene Alters the DNA Sequence Specificity of Type I Restriction-Modification System NgoAV

(2011) M. Adamczyk-Poplawska et al.   JOURNAL OF BACTERIOLOGY

Cleavage of a model DNA replication fork by a methyl-specific endonuclease

(2011) Ken Ishikawa et al.   NUCLEIC ACIDS RESEARCH

Characterization of DNA methyltransferase specificities using single-molecule, real-time DNA sequencing

(2011) Tyson A. Clark et al.   NUCLEIC ACIDS RESEARCH

Phasevarion Mediated Epigenetic Gene Regulation in Helicobacter pylori

(2011) Yogitha N. Srikhanta et al.   PLoS One

Helicobacter pylori genome evolution during human infection

(2011) L. Kennemann et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Direct detection of DNA methylation during single-molecule, real-time sequencing

(2010) Benjamin A Flusberg et al.   NATURE METHODS

Geographic distribution of methyltransferases of Helicobacter pylori: evidence of human host population isolation and migration

(2009) Filipa F Vale et al.   BMC MICROBIOLOGY

REBASE—a database for DNA restriction and modification: enzymes, genes and genomes

(2009) Richard J. Roberts et al.   NUCLEIC ACIDS RESEARCH

The Complete Genome Sequence of Helicobacter pylori Strain G27

(2008) D. A. Baltrus et al.   JOURNAL OF BACTERIOLOGY

Real-Time DNA Sequencing from Single Polymerase Molecules

(2008) J. Eid et al.   SCIENCE