4.8 Article

CO Binding to the FeV Cofactor of CO-Reducing Vanadium Nitrogenase at Atomic Resolution

期刊

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION
卷 59, 期 52, 页码 23626-23630

出版社

WILEY-V C H VERLAG GMBH
DOI: 10.1002/anie.202010790

关键词

CO reduction; iron-sulfur proteins; nitrogen fixation; nitrogenase; X-ray crystallography

资金

  1. European Research Council [310656]
  2. Deutsche Forschungsgemeinschaft [RTG 1976, 235777276, PP 1927, 311061829]
  3. Projekt DEAL

向作者/读者索取更多资源

Nitrogenases reduce N-2, the most abundant element in Earth's atmosphere that is otherwise resistant to chemical conversions due to its stable triple bond. Vanadium nitrogenase stands out in that it additionally processes carbon monoxide, a known inhibitor of the reduction of all substrates other than H+. The reduction of CO leads to the formation of hydrocarbon products, holding the potential for biotechnological applications in analogy to the industrial Fischer-Tropsch process. Here we report the most highly resolved structure of vanadium nitrogenase to date at 1.0 angstrom resolution, with CO bound to the active site cofactor after catalytic turnover. CO bridges iron ions Fe2 and Fe6, replacing sulfide S2B, in a binding mode that is in line with previous reports on the CO complex of molybdenum nitrogenase. We discuss the structural consequences of continued turnover when CO is removed, which involve the replacement of CO possibly by OH-, the movement of Q176(D)and K361(D), the return of sulfide and the emergence of two additional water molecules that are absent in the CO-bound state.

作者

我是这篇论文的作者
点击您的名字以认领此论文并将其添加到您的个人资料中。

评论

主要评分

4.8
评分不足

次要评分

新颖性
-
重要性
-
科学严谨性
-
评价这篇论文

推荐

Article Chemistry, Multidisciplinary

Histidine-Gated Proton-Coupled Electron Transfer to the CuA Site of Nitrous Oxide Reductase

Lin Zhang, Eckhard Bill, Peter M. H. Kroneck, Oliver Einsle

Summary: Copper-containing nitrous oxide reductase (N2OR) is the only known enzyme capable of converting nitrous oxide to dinitrogen, with unique Cu-Z and CUA sites. Systematic mutagenesis of histidine and surrounding H-bonding residues revealed that only variants with protonable side chains like His, Asp, and Glu can mediate electron transfer at physiological pH.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2021)

Editorial Material Multidisciplinary Sciences

Comment on Structural evidence for a dynamic metallocofactor during N2 reduction by Mo-nitrogenase

John W. Peters, Oliver Einsle, Dennis R. Dean, Serena DeBeer, Brian M. Hoffman, Patrick L. Holland, Lance C. Seefeldt

Summary: The study reports a structure of the nitrogenase MoFe protein indicating binding of N-2 or an N-2-derived species to the active-site FeMo cofactor. However, independent refinement of the structure and consideration of biochemical evidence do not support this claim.

SCIENCE (2021)

Article Biochemistry & Molecular Biology

Biosynthesis of the Tricyclic Aromatic Type II Polyketide Rishirilide: New Potential Third Ring Oxygenation after Three Cyclization Steps

Ahmad Alali, Lin Zhang, Jianyu Li, Chijian Zuo, Dimah Wassouf, Xiaohui Yan, Philipp Schwarzer, Stefan Gunther, Oliver Einsle, Andreas Bechthold

Summary: Studies have identified key genes and enzymes involved in rishirilide biosynthesis, with the potential for new secondary metabolite production through gene inactivation in Streptomyces bottropensis.

MOLECULAR BIOTECHNOLOGY (2021)

Article Biochemistry & Molecular Biology

Architecture of the membrane-bound cytochrome c heme lyase CcmF

Anton Brausemann, Lin Zhang, Lorena Ilcu, Oliver Einsle

Summary: The structure of heme lyase CcmF reveals a cavity opening towards the extracellular side for receiving heme groups from chaperone CcmE and a surface groove for guiding substrate proteins during heme attachment. The covalent attachment of heme cofactors to cytochrome c protein chains allows for electron transfer and redox catalysis in extracytoplasmic environments. The Heme lyase CcmF plays a crucial role in heme delivery and maturation within the membrane, redefining the function of the chaperone CcmE.

NATURE CHEMICAL BIOLOGY (2021)

Article Microbiology

Interrogating the Role of the Two Distinct Fructose-Bisphosphate Aldolases of Bacillus methanolicus by Site-Directed Mutagenesis of Key Amino Acids and Gene Repression by CRISPR Interference

Kerstin Schultenkaemper, Desiree D. Guetle, Marina Gil Lopez, Laura B. Keller, Lin Zhang, Oliver Einsle, Jean-Pierre Jacquot, Volker F. Wendisch

Summary: The Gram-positive bacterium Bacillus methanolicus exhibits plasmid-dependent methylotrophy and possesses two fructose bisphosphate aldolases with distinct kinetic properties. Mutations in specific amino acid residues of these aldolases affect glycolytic and gluconeogenic activities. Gene expression regulation through CRISPR interference shows compensatory effects between the two aldolases, indicating a genetic mechanism for maintaining metabolic balance.

FRONTIERS IN MICROBIOLOGY (2021)

Article Chemistry, Multidisciplinary

The Copper Chaperone NosL Forms a Heterometal Site for Cu Delivery to Nitrous Oxide Reductase

Benedikt Prasser, Lisa Schoner, Lin Zhang, Oliver Einsle

Summary: The final step of denitrification involves the reduction of nitrous oxide to N-2 by Cu-dependent nitrous oxide reductase (N2OR). The assembly of N2OR is mediated by a metallochaperone encoded by the nos gene cluster, with Cu-A and Cu-Z metal centers. While only Cu-I is delivered to the enzyme, the presence of Zn-II is crucial for the functionality and structural integrity of the chaperone.

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2021)

Article Chemistry, Multidisciplinary

Structural Basis for Inhibition of ROS-Producing Respiratory Complex I by NADH-OH

Marta Vranas, Daniel Wohlwend, Danye Qiu, Stefan Gerhardt, Christian Trncik, Mehrosh Pervaiz, Kevin Ritter, Stefan Steimle, Antonio Randazzo, Oliver Einsle, Stefan Gunther, Henning J. Jessen, Alexander Kotlyar, Thorsten Friedrich

Summary: This study reports the specific action and structure of a novel inhibitor NADH-OH on respiratory complex I, revealing its regulatory role in mitochondrial ROS generation.

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2021)

Article Biochemistry & Molecular Biology

Structural analysis of the reductase component AnfH of iron-only nitrogenase from Azotobacter vinelandii

Christian Trncik, Tanja Mueller, Philipp Franke, Oliver Einsle

Summary: This study presents the crystal structure of the ADP-bound reductase component AnfH of the iron-only nitrogenase and compares it with other iron protein homologs. The results show that all three iron proteins adopt the same conformation. Cross-reactivity assays reveal that AnfH is compatible with iron-only nitrogenase and to a lesser degree with the vanadium-containing enzyme, but not with molybdenum nitrogenase.

JOURNAL OF INORGANIC BIOCHEMISTRY (2022)

Article Multidisciplinary Sciences

Molecular interplay of an assembly machinery for nitrous oxide reductase

Christoph Mueller, Lin Zhang, Sara Zipfel, Annika Topitsch, Marleen Lutz, Johannes Eckert, Benedikt Prasser, Mohamed Chami, Wei Lu, Juan Du, Oliver Einsle

Summary: This study presents a mechanism of copper trafficking and assembly mediated by NosDFY, NosL, and N2OR, which is facilitated by ATP hydrolysis. This mechanism provides new structural insights to understand critical climate change and environmental issues.

NATURE (2022)

Article Multidisciplinary Sciences

Respiratory complex I with charge symmetry in the membrane arm pumps protons

Franziska Hoeser, Hannes Tausend, Sinja Gotz, Daniel Wohlwend, Oliver Einsle, Stefan Gunther, Thorsten Friedrich

Summary: Energy-converting NADH: ubiquinone oxidoreductase, respiratory complex I, plays a crucial role in coupling NADH oxidation to proton translocation in cellular energy metabolism. The membrane arm of complex I contains a unique axis of polar and charged amino acid residues that are proposed to catalyze proton translocation. However, our study shows that charge asymmetry is not essential for proton translocation, casting doubts on the previous suggestion of an asynchronous operation of the subunits involved. Our findings highlight the importance of a balanced charge distribution in the protein for directional proton transfer.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2022)

Article Multidisciplinary Sciences

Stabilization of membrane topologies by proteinaceous remorin scaffolds

Chao Su, Marta Rodriguez-Franco, Beatrice Lace, Nils Nebel, Casandra Hernandez-Reyes, Pengbo Liang, Eija Schulze, Evgeny V. Mymrikov, Nikolas M. Gross, Julian Knerr, Hong Wang, Lina Siukstaite, Jean Keller, Cyril Libourel, Alexandra A. M. Fischer, Katharina E. Gabor, Eric Mark, Claudia Popp, Carola Hunte, Wilfried Weber, Petra Wendler, Thomas Stanislas, Pierre-Marc Delaux, Oliver Einsle, Robert Grosse, Winfried Roemer, Thomas Ott

Summary: The organization of membranes in plants is mainly controlled by the cell wall and cytoskeleton, with some proteins, such as remorins, playing a role in protein and lipid organization. Symbiosis-specific SYMREM1 gene mutations disrupt membrane organization in root nodules. AlphaFold modeling and biochemical analyses reveal that SYMREM1 forms oligomers and may contribute to higher-order membrane scaffolding.

NATURE COMMUNICATIONS (2023)

Review Biochemistry & Molecular Biology

Structural biology of proteins involved in nitrogen cycling

Pawel Lycus, Oliver Einsle, Lin Zhang

Summary: Microbial metabolic processes drive the global nitrogen cycle through metalloenzymes that facilitate redox reactions at ambient conditions. Recent developments in spectroscopy and structural biology have provided powerful tools for understanding nitrogen metabolism and its environmental implications. This review focuses on the contributions of structural biology to nitrogen metabolism and highlights the potential for biotechnological applications to manage the global nitrogen cycle.

CURRENT OPINION IN CHEMICAL BIOLOGY (2023)

Article Chemistry, Medicinal

A novel pan-selective bromodomain inhibitor for epigenetic drug design

Robin Warstat, Mehrosh Pervaiz, Pierre Regenass, Marius Amann, Karin Schmidtkunz, Oliver Einsle, Manfred Jung, Bernhard Breit, Martin Huegle, Stefan Guenther

Summary: For a long time, BD inhibitors were mainly related to the BET family, but now inhibitors for BDs outside the BET family have been developed. We present a new pan-BD inhibitor that shows affinity to various BDs and exhibits broad activity against different cancer cell lines. Through modifications, we were able to control the selectivity of the inhibitor and make it a highly selective BRD9 inhibitor.

EUROPEAN JOURNAL OF MEDICINAL CHEMISTRY (2023)

Review Biochemistry & Molecular Biology

Overview of physiological, biochemical, and regulatory aspects of nitrogen fixation in Azotobacter vinelandii

Julia S. Martin del Campo, Jack Rigsbee, Marcelo Bueno Batista, Florence Mus, Luis M. Rubio, Oliver Einsle, John W. Peters, Ray Dixon, Dennis R. Dean, Patricia C. Dos Santos

Summary: Understanding the reduction of nitrogen gas to ammonia at ambient conditions has been a longstanding challenge. This knowledge is crucial for transferring biological nitrogen fixation to crops and developing improved synthetic catalysts. Azotobacter vinelandii has emerged as the preferred model organism for studying this process over the past 30 years. This review summarizes the current understanding and places it in historical context.

CRITICAL REVIEWS IN BIOCHEMISTRY AND MOLECULAR BIOLOGY (2022)

Article Biochemistry & Molecular Biology

Development of a NanoBRET assay to validate inhibitors of Sirt2-mediated lysine deacetylation and defatty-acylation that block prostate cancer cell migration

A. Vogelmann, M. Schiedel, N. Woessner, A. Merz, D. Herp, S. Hammelmann, A. Colcerasa, G. Komaniecki, J. Y. Hong, M. Sum, E. Metzger, E. Neuwirt, L. Zhang, O. Einsle, O. Gross, R. Schuele, H. Lin, W. Sippl, M. Jung

Summary: In this study, a new Sirt2 inhibitor called SirReals was developed, which can simultaneously inhibit two activities of Sirt2, resulting in reduced levels of oncoprotein c-Myc and inhibition of cancer cell migration. A NanoBRET-based assay for studying cellular target engagement of Sirt2 was also developed.

RSC CHEMICAL BIOLOGY (2022)

暂无数据