Temporal Changes in Microbial Communities Beneath Fish Farm Sediments Are Related to Organic Enrichment and Fish Biomass Over a Production Cycle

Exploring changes in bacterial communities to assess the influence of fish farming on marine sediments

(2019) Esther Rubio-Portillo et al.   AQUACULTURE

Biostimulation of in situ microbial degradation processes in organically-enriched sediments mitigates the impact of aquaculture

(2019) Francesca Ape et al.   CHEMOSPHERE

Predicting shifting sustainability trade-offs in marine finfish aquaculture under climate change

(2018) Gianluca Sarà et al.   GLOBAL CHANGE BIOLOGY

Environmental DNA metabarcoding of benthic bacterial communities indicates the benthic footprint of salmon aquaculture

(2018) Thorsten Stoeck et al.   MARINE POLLUTION BULLETIN

Temporal Bacterial Surveillance of Salmon Aquaculture Sites Indicates a Long Lasting Benthic Impact With Minimal Recovery

(2018) Joost T. P. Verhoeven et al.   Frontiers in Microbiology

The role of two non-indigenous serpulid tube worms in shaping artificial hard substrata communities: case study of a fish farm in the central Mediterranean Sea

(2018) MC Mangano et al.   Aquaculture Environment Interactions

A bacterial community-based index to assess the ecological status of estuarine and coastal environments

(2017) Eva Aylagas et al.   MARINE POLLUTION BULLETIN

Persistence and risk of antibiotic residues and antibiotic resistance genes in major mariculture sites in Southeast China

(2017) C.Q. Chen et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Implications of Sea Bream and Sea Bass Escapes for Sustainable Aquaculture Management: A Review of Interactions, Risks and Consequences

(2017) P. Arechavala-Lopez et al.   Reviews in Fisheries Science & Aquaculture

Disturbance Increases Microbial Community Diversity and Production in Marine Sediments

(2016) Pierre E. Galand et al.   Frontiers in Microbiology

The implications of aquaculture policy and regulation for the development of integrated multi-trophic aquaculture in Europe

(2015) K.A. Alexander et al.   AQUACULTURE

Microbial Community Composition and Diversity via 16S rRNA Gene Amplicons: Evaluating the Illumina Platform

(2015) Lucas Sinclair et al.   PLoS One

Patterns of benthic bacterial diversity in coastal areas contaminated by heavy metals, polycyclic aromatic hydrocarbons (PAHs) and polychlorinated biphenyls (PCBs)

(2015) Grazia Marina Quero et al.   Frontiers in Microbiology

High-throughput sequencing and morphology perform equally well for benthic monitoring of marine ecosystems

(2015) Franck Lejzerowicz et al.   Scientific Reports

Community structure changes in sediment bacterial communities along an organic enrichment gradient associated with fish farming

(2014) Stilianos Fodelianakis et al.   ANNALS OF MICROBIOLOGY

Environmental monitoring through protist next-generation sequencing metabarcoding: assessing the impact of fish farming on benthic foraminifera communities

(2014) Jan Pawlowski et al.   Molecular Ecology Resources

Dietary differences are reflected on the gut prokaryotic community structure of wild and commercially reared sea bream (Sparus aurata)

(2014) Konstantinos A. Kormas et al.   MicrobiologyOpen

Redox effects on the microbial degradation of refractory organic matter in marine sediments

(2013) Clare E. Reimers et al.   GEOCHIMICA ET COSMOCHIMICA ACTA

Ecology of marine Bacteroidetes: a comparative genomics approach

(2013) Beatriz Fernández-Gómez et al.   ISME Journal

Impacts of Mariculture on the Diversity of Bacterial Communities within Intertidal Sediments in the Northeast of China

(2013) Jialin Li et al.   MICROBIAL ECOLOGY

Meiofauna as an indicator for assessing the impact of fish farming at an exposed marine site

(2012) Simone Mirto et al.   ECOLOGICAL INDICATORS

Novel observations of benthic enrichment in contrasting flow regimes with implications for marine farm monitoring and management

(2012) Nigel B. Keeley et al.   MARINE POLLUTION BULLETIN

Environmental and ecological factors that shape the gut bacterial communities of fish: a meta-analysis

(2012) KAREN E. SULLAM et al.   MOLECULAR ECOLOGY

Impact of aquaculture on benthic virus–prokaryote interactions in the Mediterranean Sea

(2012) G.M. Luna et al.   WATER RESEARCH

A novel statistical method for classifying habitat generalists and specialists

(2011) Robin L. Chazdon et al.   ECOLOGY

Coherent dynamics and association networks among lake bacterioplankton taxa

(2011) Alexander Eiler et al.   ISME Journal

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Tetracycline Resistance Genes Persist at Aquaculture Farms in the Absence of Selection Pressure

(2010) Manu Tamminen et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Response of the methanogenic microbial community of a profundal lake sediment (Lake Kinneret, Israel) to algal deposition

(2010) Julia I. K. Schwarz et al.   LIMNOLOGY AND OCEANOGRAPHY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Effects of organic perturbation on marine sediment betaproteobacterial ammonia oxidizers and on benthic nitrogen biogeochemistry

(2009) A Bissett et al.   MARINE ECOLOGY PROGRESS SERIES

Fish-farm impact on metazoan meiofauna in the Mediterranean Sea: Analysis of regional vs. habitat effects

(2009) Simone Mirto et al.   MARINE ENVIRONMENTAL RESEARCH

Comparison of bacterial communities in fish farm sediments along an organic enrichment gradient

(2008) Naoki Kawahara et al.   AQUACULTURE

Gradients of coastal fish farm effluents and their effect on coral reef microbes

(2008) Melissa Garren et al.   ENVIRONMENTAL MICROBIOLOGY

Towards a classification of organic enrichment in marine sediments based on biogeochemical indicators

(2008) B.T. Hargrave et al.   MARINE POLLUTION BULLETIN