Metagenomic analysis of planktonic riverine microbial consortia using nanopore sequencing reveals insight into river microbe taxonomy and function

Assembly-free single-molecule sequencing recovers complete virus genomes from natural microbial communities

(2020) John Beaulaurier et al.   GENOME RESEARCH

Metagenomic analysis of planktonic riverine microbial consortia using nanopore sequencing reveals insight into river microbe taxonomy and function

(2020) Kate Reddington et al.   GigaScience

Metagenomic Profiling of Microbial Pathogens in the Little Bighorn River, Montana

(2019) Steve Hamner et al.   International Journal of Environmental Research and Public Health

Ultra-deep, long-read nanopore sequencing of mock microbial community standards

(2019) Samuel M Nicholls et al.   GigaScience

Hybrid metagenomic assembly enables high-resolution analysis of resistance determinants and mobile elements in human microbiomes

(2019) Denis Bertrand et al.   NATURE BIOTECHNOLOGY

Strain-level metagenomic assignment and compositional estimation for long reads with MetaMaps

(2019) Alexander T. Dilthey et al.   Nature Communications

Evaluation of 16S rRNA gene sequencing for species and strain-level microbiome analysis

(2019) Jethro S. Johnson et al.   Nature Communications

Novel Insights into Selection for Antibiotic Resistance in Complex Microbial Communities

(2018) Aimee K. Murray et al.   mBio

Marine microbial metagenomes sampled across space and time

(2018) Steven J. Biller et al.   Scientific Data

Salinity Drives the Virioplankton Abundance but Not Production in Tropical Coastal Lagoons

(2017) Pedro C. Junger et al.   MICROBIAL ECOLOGY

On site DNA barcoding by nanopore sequencing

(2017) Michele Menegon et al.   PLoS One

Metagenomic assembly unravel microbial response to redox fluctuation in acid sulfate soil

(2017) Jian-Qiang Su et al.   SOIL BIOLOGY & BIOCHEMISTRY

MinION™ nanopore sequencing of environmental metagenomes: a synthetic approach

(2017) Bonnie L. Brown et al.   GigaScience

Environmental DNA reveals that rivers are conveyer belts of biodiversity information

(2016) Kristy Deiner et al.   Nature Communications

Moleculo Long-Read Sequencing Facilitates Assembly and Genomic Binning from Complex Soil Metagenomes

(2016) Richard Allen White et al.   mSystems

Structure and function of the global ocean microbiome

(2015) S. Sunagawa et al.   SCIENCE

Metagenomic analysis of planktonic microbial consortia from a non-tidal urban-impacted segment of James River

(2015) Bonnie L. Brown et al.   Standards in Genomic Sciences

Waste water effluent contributes to the dissemination of CTX-M-15 in the natural environment

(2014) G. C. A. Amos et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Core functional traits of bacterial communities in the Upper Mississippi River show limited variation in response to land cover

(2014) Christopher Staley et al.   Frontiers in Microbiology

Kraken: ultrafast metagenomic sequence classification using exact alignments

(2014) Derrick E Wood et al.   GENOME BIOLOGY

Application of Illumina next-generation sequencing to characterize the bacterial community of the Upper Mississippi River

(2013) C. Staley et al.   JOURNAL OF APPLIED MICROBIOLOGY

Evaluation of Methods for the Extraction and Purification of DNA from the Human Microbiome

(2012) Sanqing Yuan et al.   PLoS One

Metagenomic Insights into the Evolution, Function, and Complexity of the Planktonic Microbial Community of Lake Lanier, a Temperate Freshwater Ecosystem

(2011) Seungdae Oh et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

A Guide to the Natural History of Freshwater Lake Bacteria

(2011) R. J. Newton et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Pyrosequencing of Antibiotic-Contaminated River Sediments Reveals High Levels of Resistance and Gene Transfer Elements

(2011) Erik Kristiansson et al.   PLoS One

Metagenomics of the Water Column in the Pristine Upper Course of the Amazon River

(2011) Rohit Ghai et al.   PLoS One

Can the black box be cracked? The augmentation of microbial ecology by high-resolution, automated sensing technologies

(2009) Ashley Shade et al.   ISME Journal