Laser capture microdissection coupled mass spectrometry (LCM-MS) for spatially resolved analysis of formalin-fixed and stained human lung tissues

BayesENproteomics: Bayesian Elastic Nets for Quantification of Peptidoforms in Complex Samples

(2020) Venkatesh Mallikarjun et al.   JOURNAL OF PROTEOME RESEARCH

Quantitative proteomic characterization of lung tissue in idiopathic pulmonary fibrosis

(2019) Yaqiong Tian et al.   Clinical Proteomics

Development of a Sensitive, Scalable Method for Spatial, Cell-Type-Resolved Proteomics of the Human Brain

(2019) Simon Davis et al.   JOURNAL OF PROTEOME RESEARCH

Dicer1 Deficiency in the IPF Fibroblastic Focus Promotes Fibrosis by Suppressing MicroRNA Biogenesis

(2018) Jeremy Herrera et al.   AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE

Extracellular matrix as a driver of progressive fibrosis

(2018) Jeremy Herrera et al.   JOURNAL OF CLINICAL INVESTIGATION

Quantitative proteomic characterization of the lung extracellular matrix in chronic obstructive pulmonary disease and idiopathic pulmonary fibrosis

(2018) Emma Åhrman et al.   Journal of Proteomics

Spatially resolved proteome mapping of laser capture microdissected tissue with automated sample transfer to nanodroplets

(2018) Ying Zhu et al.   MOLECULAR & CELLULAR PROTEOMICS

Diagnostic criteria for idiopathic pulmonary fibrosis: a Fleischner Society White Paper

(2018) David A Lynch et al.   Lancet Respiratory Medicine

Novel Differences in Gene Expression and Functional Capabilities of Myofibroblast Populations in Idiopathic Pulmonary Fibrosis

(2018) Sinead M Walsh et al.   AMERICAN JOURNAL OF PHYSIOLOGY-LUNG CELLULAR AND MOLECULAR PHYSIOLOGY

S-Trap, an Ultrafast Sample-Preparation Approach for Shotgun Proteomics

(2018) Milkessa HaileMariam et al.   JOURNAL OF PROTEOME RESEARCH

Proteomic signatures reveal a dualistic and clinically relevant classification of anal canal carcinoma

(2017) Michael Herfs et al.   JOURNAL OF PATHOLOGY

Characterization of the Extracellular Matrix of Normal and Diseased Tissues Using Proteomics

(2017) Alexandra Naba et al.   JOURNAL OF PROTEOME RESEARCH

The Reactome Pathway Knowledgebase

(2017) Antonio Fabregat et al.   NUCLEIC ACIDS RESEARCH

The arterial microenvironment: the where and why of atherosclerosis

(2016) A. Yurdagul et al.   BIOCHEMICAL JOURNAL

Proteomic analysis of naturally-sourced biological scaffolds

(2016) Qiyao Li et al.   BIOMATERIALS

A laser microdissection-based workflow for FFPE tissue microproteomics: Important considerations for small sample processing

(2016) Rémi Longuespée et al.   METHODS

The MaxQuant computational platform for mass spectrometry-based shotgun proteomics

(2016) Stefka Tyanova et al.   Nature Protocols

UniProt: the universal protein knowledgebase

(2016)   NUCLEIC ACIDS RESEARCH

Proteomic Challenges: Sample Preparation Techniques for Microgram-Quantity Protein Analysis from Biological Samples

(2015) Peter Feist et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Time- and compartment-resolved proteome profiling of the extracellular niche in lung injury and repair

(2015) H. B. Schiller et al.   Molecular Systems Biology

Determining composition of micron-scale protein deposits in neurodegenerative disease by spatially targeted optical microproteomics

(2015) Kevin C Hadley et al.   eLife

The extracellular matrix modulates the hallmarks of cancer

(2014) M. W. Pickup et al.   EMBO REPORTS

Fibrotic extracellular matrix activates a profibrotic positive feedback loop

(2014) Matthew W. Parker et al.   JOURNAL OF CLINICAL INVESTIGATION

Mechanotransduction and extracellular matrix homeostasis

(2014) Jay D. Humphrey et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Next-Generation Sequencing of RNA and DNA Isolated from Paired Fresh-Frozen and Formalin-Fixed Paraffin-Embedded Samples of Human Cancer and Normal Tissue

(2014) Jakob Hedegaard et al.   PLoS One

Suspension trapping (STrap) sample preparation method for bottom-up proteomics analysis

(2014) Alexandre Zougman et al.   PROTEOMICS

Mass spectrometry imaging with high resolution in mass and space

(2013) Andreas Römpp et al.   HISTOCHEMISTRY AND CELL BIOLOGY

Defining the extracellular matrix using proteomics

(2013) Adam Byron et al.   INTERNATIONAL JOURNAL OF EXPERIMENTAL PATHOLOGY

Annexin A2 mediates secretion of collagen VI, pulmonary elasticity and apoptosis of bronchial epithelial cells

(2013) MaryAnn Dassah et al.   JOURNAL OF CELL SCIENCE

Liver Fibrosis in Elderly Cadavers: Localization of Collagen Types I, III, and IV, α-Smooth Muscle Actin, and Elastic Fibers

(2012) Ki M. Mak et al.   Anatomical Record-Advances in Integrative Anatomy and Evolutionary Biology

Functions of S100 Proteins

(2012) R. Donato et al.   CURRENT MOLECULAR MEDICINE

Matrix metalloproteinases and their inhibitors in pulmonary hypertension

(2012) Prakash Chelladurai et al.   EUROPEAN RESPIRATORY JOURNAL

Annotating Cancer Variants and Anti-Cancer Therapeutics in Reactome

(2012) Marija Milacic et al.   Cancers

Vascular Smooth Muscle Progenitor Cells

(2011) Mark W. Majesky et al.   CIRCULATION RESEARCH

Quantitative Proteomic Analysis of Formalin-fixed and Paraffin-embedded Nasopharyngeal Carcinoma Using iTRAQ Labeling, Two-dimensional Liquid Chromatography, and Tandem Mass Spectrometry

(2010) Zhefeng Xiao et al.   JOURNAL OF HISTOCHEMISTRY & CYTOCHEMISTRY

Proteomic analysis of formalin-fixed, paraffin-embedded lung neuroendocrine tumor samples from hospital archives

(2010) Alessandro Tanca et al.   Journal of Proteomics

Gene expression analysis of the microvascular compartment in multiple sclerosis using laser microdissected blood vessels

(2009) Paula Cunnea et al.   ACTA NEUROPATHOLOGICA

MUC1 Mucin

(2008) K. Chul Kim et al.   AMERICAN JOURNAL OF RESPIRATORY CELL AND MOLECULAR BIOLOGY

Proteomic Analysis of Laser-Captured Paraffin-Embedded Tissues: A Molecular Portrait of Head and Neck Cancer Progression

(2008) V. Patel et al.   CLINICAL CANCER RESEARCH

Identification of Novel Nasopharyngeal Carcinoma Biomarkers by Laser Capture Microdissection and Proteomic Analysis

(2008) A.-L. Cheng et al.   CLINICAL CANCER RESEARCH